Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C24
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0290 + 29016410-29018920                                         30   1.2  
03_05_0244 - 22295105-22295389                                         29   2.8  
01_07_0171 + 41683670-41683872,41684386-41684483,41684614-416846...    29   2.8  

>05_07_0290 + 29016410-29018920
          Length = 836

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -3

Query: 237 GGGRYNSSVDSNSWPQGPALP*IGFLRLQTAYSSAGIHSKKWRWWSSVRTKFTV 76
           G GR    +  + W  G     I F  L TA  S G+ ++ W ++ S+ TK+ V
Sbjct: 543 GQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGV 596


>03_05_0244 - 22295105-22295389
          Length = 94

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 300 ISEIALSMNA*VPDSTDEPCSGGGRYNSSVDSNSWPQGPALP 175
           ++ +A S ++ +P S   P  GGG  + +  S   P GP+LP
Sbjct: 2   VAGVASSSSSTLPSSPLSPGGGGGGCSVAYSSAILPSGPSLP 43


>01_07_0171 +
           41683670-41683872,41684386-41684483,41684614-41684692,
           41684845-41685000,41685021-41685146,41686249-41686540,
           41686978-41687053,41687295-41687392,41687523-41687665,
           41688522-41688579,41689055-41689213,41689291-41689343,
           41689978-41690212,41690317-41690403,41690607-41690711
          Length = 655

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 338 KFIPVKDGMWLNRSQKSHCR*THRFQIVRMNPA 240
           K +PV DG+W+ R +K H      F + R N A
Sbjct: 445 KHLPVGDGIWIARDRKLHTEYVLDFIVERKNVA 477


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,255,579
Number of Sequences: 37544
Number of extensions: 292275
Number of successful extensions: 597
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)