Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C24
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine rece...    30   1.4  
Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical ...    28   5.7  
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z81551-2|CAB04482.4|  413|Caenorhabditis elegans Hypothetical pr...    27   10.0 
DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.     27   10.0 

>U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein3 protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = +3

Query: 120 LSGCPHWSTQFEVLGSRFTAELALVANYCYLHYYYTSHRQSRVHPYY 260
           L G  ++S +F++      A  ++++  CY+  ++T H+ S + P +
Sbjct: 168 LDGVTNYSDEFDI---PLNASSSIISGLCYIKIFWTQHKSSPICPTF 211


>Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical
           protein K04G2.10 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 589 TVVAFILINLLFHYFE*FTVFVFIRRHLNSSYCRHLSRH 473
           T+  F+L+ L+F++F    +F+F     NS+  R + R+
Sbjct: 61  TLPIFVLVFLIFYFFWNTLIFIFFIYFRNSTLKRSMQRY 99


>AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical
           protein ZC581.9 protein.
          Length = 827

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 446 LAVSGRLQYQGTVKSLSNAESHLKKDMS*RSGNNVD 339
           L+  GRL+ +G+ +   ++   L+ DMS R GN  D
Sbjct: 685 LSADGRLEDRGSRRESRDSRGSLESDMSIRIGNGSD 720


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -1

Query: 458  NHLKLAVSGR-LQYQGTVKSLSNAESHLKKDMS*RSGNNVDKFIPVKDGMWLNRSQKS 288
            N +  AV+G  +  Q ++K +   E HL++DM+ + G  V + I  K    L   +K+
Sbjct: 1418 NEIGEAVTGATVHVQPSLKRVVTTEHHLQEDMNEQIGQPVQQTIITKKSQELETREKT 1475


>Z81551-2|CAB04482.4|  413|Caenorhabditis elegans Hypothetical
           protein F56A12.2 protein.
          Length = 413

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 581 RLYFNQFIIPLF*IVYSFCLYSTSFE*FLL*T 486
           R +F  F++P+  ++  F ++STS+  F L T
Sbjct: 199 RRFFRPFLVPILLVILCFVIHSTSYFEFNLIT 230


>DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.
          Length = 2084

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 199  LATRASSAVNRLPKTSNCVLQCGH 128
            +A + S+AV  + +  +C L+CGH
Sbjct: 1474 IARKRSTAVQEVRRKKSCTLRCGH 1497


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,997,947
Number of Sequences: 27780
Number of extensions: 251406
Number of successful extensions: 572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)