Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C24
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 448 LR*LHNKNDVY*DVYNKNYSNDVE*RQKL 534
           +R LH++  V+ DV  KN   D+E R KL
Sbjct: 710 IRYLHSQGLVHRDVKLKNVLLDIENRAKL 738


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 448 LR*LHNKNDVY*DVYNKNYSNDVE*RQKL 534
           +R LH++  V+ DV  KN   D+E R KL
Sbjct: 748 IRYLHSQGLVHRDVKLKNVLLDIENRAKL 776


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 457 LHNKNDVY*DVYNKNYSN 510
           +HN N+   + YN NY+N
Sbjct: 323 IHNNNNYNNNNYNNNYNN 340


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 335 TYPRCYPNAMTCPSSNEIRR*IAT*LSPD 421
           ++P  YP A T P S    + +   +SPD
Sbjct: 391 SFPSLYPMATTSPQSQSTIQTLRPQVSPD 419


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 460 HNKNDVY*DVYNKNYSND 513
           +N N+ Y + YN NY+N+
Sbjct: 95  NNYNNNYNNNYNNNYNNN 112


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 460 HNKNDVY*DVYNKNYSND 513
           +N N+ Y + YN NY+N+
Sbjct: 95  NNYNNNYNNNYNNNYNNN 112


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 437 SGRLQYQGTVKSLSNAESHL 378
           +GRL+YQ +   +S  E+H+
Sbjct: 440 NGRLKYQISDNDISTNETHI 459


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 445 SLR*LHNKNDVY*DVYNKNYSND 513
           S R +HN N+   +  N NY+N+
Sbjct: 86  SNRTIHNNNNYKYNYNNNNYNNN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,712
Number of Sequences: 438
Number of extensions: 3136
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)