Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C22
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1776 + 29436477-29438240                                         31   0.73 
12_01_0282 - 2088302-2089081                                           29   2.9  
05_04_0116 + 18131510-18133192                                         29   2.9  
07_03_0441 + 18256103-18258076                                         28   3.9  
01_01_0779 - 6030245-6031780                                           28   3.9  
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927     27   6.8  
07_01_0140 + 1022878-1023057,1024461-1024579,1024952-1025237           27   6.8  
11_01_0273 - 2048527-2049297                                           27   8.9  
08_02_0196 - 14125037-14125175,14125525-14125604,14125938-141264...    27   8.9  

>07_03_1776 + 29436477-29438240
          Length = 587

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 182 SPARRPTRMWCLCRTLQLPATPFPTF--HPYQYLPSTALRSPASTHKSHTQMIISFVNKM 355
           S A R ++   +  +  LPA P PTF   P  Y  S  L + AS H +     ++F++K 
Sbjct: 174 STAIRESKPVYISVSCNLPAVPHPTFSRDPVPYFLSPRLSNQASLHAA-LDATLAFLDKA 232

Query: 356 LK*IHTSG 379
           +K +  +G
Sbjct: 233 VKPVLVAG 240


>12_01_0282 - 2088302-2089081
          Length = 259

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 179 SSPARRPTRMWCLCRTLQLPATPFPTFHPYQYL--PSTALRSPAST 310
           SS   RPT + CLC    LPATP PT      L  P    R+P ST
Sbjct: 26  SSGCGRPTTV-CLCP--YLPATPLPTSTTVVILHHPHALRRNPLST 68


>05_04_0116 + 18131510-18133192
          Length = 560

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 194 AAQAKRASIVIKNALNILILCHLLSSTVHDLH*HS*KMSYFIYLVHFKGTHRNTWV 27
           A  A  A    ++ LN+  L HL +  V+++   + +   FI++V   G H   WV
Sbjct: 228 ALTAWEAEFARQSFLNLCPLLHLAAVAVNEIILETTRNDKFIHIVDLGGIHHAHWV 283


>07_03_0441 + 18256103-18258076
          Length = 657

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +2

Query: 221 RTLQLPATPFPTFHPYQYLPSTALRSPASTHKSHTQMIISFVNKMLK*IHTSGTSS 388
           R+  L   P P+ H Y+ LPS A+ +   +H  H  ++  +V+ +    H+S +SS
Sbjct: 100 RSPHLLPNPLPSLHFYRSLPS-AVAADLLSHPHH--LVSCYVSLLRSFAHSSSSSS 152


>01_01_0779 - 6030245-6031780
          Length = 511

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 202 PYVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYPQIAYANDYIFRK*NVKVNTYIWN 381
           P++    +  TA Y +    ++  P+VY S+F GF    A+  D  F +   +   Y  N
Sbjct: 389 PHIAVEAFQLTAQYTIPK-GTMVFPSVYESSFQGFQDADAFDPDRFFSEARREDVVYKRN 447

Query: 382 FFCY 393
           F  +
Sbjct: 448 FLAF 451


>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
          Length = 229

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 246 GVAGSCSVRQRHHIRVGRRAGEESQHCDQKR 154
           G A +C  R+RHH R+  R     +HC+++R
Sbjct: 85  GSARNCR-RRRHHPRIRLRPPPTRRHCERER 114


>07_01_0140 + 1022878-1023057,1024461-1024579,1024952-1025237
          Length = 194

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 239 ATPFPTFHPYQYLPSTALRSPASTHKSHTQMI 334
           A P P+ HP   L +TA  SPA+   +  + I
Sbjct: 25  APPLPSLHPAAQLMTTAFSSPAAAAAARVRRI 56


>11_01_0273 - 2048527-2049297
          Length = 256

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 179 SSPARRPTRMWCLCRTLQLPATPFPTFHPYQYL--PSTALRSPAST 310
           SS   RP+ + CLC    LPATP PT      L  P    R+P ST
Sbjct: 26  SSGCGRPSTV-CLCP--YLPATPLPTSTTVVVLHHPHALRRNPLST 68


>08_02_0196 -
           14125037-14125175,14125525-14125604,14125938-14126463,
           14126809-14126852,14127444-14127584,14127696-14128463
          Length = 565

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 82  IFHE-C--QCKSCTVELSK*QSIKMFKAFLITMLALFACAAADPYVV 213
           +FH  C  Q  SC   +    ++ +    L+  L LF C+  DPY++
Sbjct: 26  LFHSRCKVQSASCAFTIDDLSAVNLVSIELMEKLNLFTCSHPDPYLL 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,845,478
Number of Sequences: 37544
Number of extensions: 241709
Number of successful extensions: 695
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)