Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C22
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81531-6|CAB04317.2|  330|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.6  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.6  
U97013-6|AAB52337.1|  221|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical...    27   6.0  
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z81531-6|CAB04317.2|  330|Caenorhabditis elegans Hypothetical
           protein F36D3.6 protein.
          Length = 330

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 202 PYVVPLPYAATAGYPLSYVSSLSVPTV 282
           P+V+   YAA AGYPL  +  L VPT+
Sbjct: 72  PFVI---YAAVAGYPLGVIVYLGVPTI 95


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 186  LRGGRPVC--GASAVRCNCRLPPFLRFILISTYRLQLCVHRLL 308
            +R G+  C  GA+  RC+  LP +LR       R   CVH L+
Sbjct: 2098 VRTGQCHCQEGATGSRCDQCLPSYLRIPTYGCRRCDECVHHLI 2140


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 186  LRGGRPVC--GASAVRCNCRLPPFLRFILISTYRLQLCVHRLL 308
            +R G+  C  GA+  RC+  LP +LR       R   CVH L+
Sbjct: 2098 VRTGQCHCQEGATGSRCDQCLPSYLRIPTYGCRRCDECVHHLI 2140


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 186  LRGGRPVC--GASAVRCNCRLPPFLRFILISTYRLQLCVHRLL 308
            +R G+  C  GA+  RC+  LP +LR       R   CVH L+
Sbjct: 2098 VRTGQCHCQEGATGSRCDQCLPSYLRIPTYGCRRCDECVHHLI 2140


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 186  LRGGRPVC--GASAVRCNCRLPPFLRFILISTYRLQLCVHRLL 308
            +R G+  C  GA+  RC+  LP +LR       R   CVH L+
Sbjct: 2098 VRTGQCHCQEGATGSRCDQCLPSYLRIPTYGCRRCDECVHHLI 2140


>U97013-6|AAB52337.1|  221|Caenorhabditis elegans Hypothetical
           protein F28H1.1 protein.
          Length = 221

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 242 TPFPTFHPYQYLPSTALRSPASTHKSHTQ 328
           TP PTF PY    S +L SP ++  S+ +
Sbjct: 156 TPLPTFQPYPSTRSYSLESPTTSVTSNEE 184


>AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical
           protein Y105C5A.24 protein.
          Length = 478

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +2

Query: 83  FFMNVSANRVQSNLASDKVSKCLRRF*SQCWLSSPARRPTRMWCL----CRTLQLPATPF 250
           F  NV+   ++ +    + +  L  F  +CW  +PA RPT   C+    C   + P    
Sbjct: 250 FLYNVATRNLRPH--EIECNPILSNFYKRCWSDNPASRPTSADCVEYFRCLRSEYPNGNV 307

Query: 251 PTFHP 265
           P + P
Sbjct: 308 PLWDP 312


>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
           protein B0379.3b protein.
          Length = 1050

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 221 RTLQLPATPFPTFHPYQYLPSTALRSPASTHKSHTQMIISFVNKML 358
           R +QLP TP  T  P +  P   +R+P    +        F+N+ L
Sbjct: 654 RNVQLPFTPADTHKPIKVAPKEPVRNPLLKERPSAN---GFINRRL 696


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
           protein B0379.3a protein.
          Length = 1054

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 221 RTLQLPATPFPTFHPYQYLPSTALRSPASTHKSHTQMIISFVNKML 358
           R +QLP TP  T  P +  P   +R+P    +        F+N+ L
Sbjct: 658 RNVQLPFTPADTHKPIKVAPKEPVRNPLLKERPSAN---GFINRRL 700


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,371,900
Number of Sequences: 27780
Number of extensions: 213183
Number of successful extensions: 685
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)