Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C21
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...   263   2e-71
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...   237   1e-63
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    49   6e-07
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    32   0.11 
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    28   1.3  

>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score =  263 bits (645), Expect = 2e-71
 Identities = 113/168 (67%), Positives = 134/168 (79%)
 Frame = +1

Query: 274 HPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKFHSDDYIRFLRSIRPDNVSEY 453
           HPMKPHR+RM HNL++NY LY K+ +  P +AT ++MT+ H+D+YI FL  + PD + ++
Sbjct: 25  HPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRNDMTRCHTDEYIEFLWRVTPDTMEKF 84

Query: 454 NKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEA 633
                +FNVG+DCPVFDGLYEFC +SAGGS+ AA +LN   +EI INW GGLHHAKK EA
Sbjct: 85  QPHQLKFNVGDDCPVFDGLYEFCSISAGGSIGAAQELNSGNAEIAINWAGGLHHAKKREA 144

Query: 634 SGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDGVEXAFYTTDRVMT 777
           SGFCYVNDI L  LELLKYHQRVLYIDIDVHHGDGVE  FYTTDRVMT
Sbjct: 145 SGFCYVNDIALAALELLKYHQRVLYIDIDVHHGDGVEEFFYTTDRVMT 192


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score =  237 bits (581), Expect = 1e-63
 Identities = 105/194 (54%), Positives = 139/194 (71%)
 Frame = +1

Query: 196 SMQPHSKKRVCXXXXXXXXXXXXXQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATA 375
           S +P  KKRV                HPMKPHRI +T++L++ YGL+ KM ++ P  AT 
Sbjct: 20  SFRPQ-KKRVTYHLDEQVGNYHYGDKHPMKPHRITITNHLVMGYGLHNKMSVFSPRMATF 78

Query: 376 DEMTKFHSDDYIRFLRSIRPDNVSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAA 555
            EM++FH +DY+ FL+ + PDN  ++  + Q+FN+G+DCPVFDG YEF Q SAG S+ A+
Sbjct: 79  GEMSEFHREDYLDFLKRVTPDNAEQFADKFQQFNIGDDCPVFDGTYEFSQRSAGASLDAS 138

Query: 556 VKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGD 735
            KL +  ++I INW GGLHHAK+ EASGFCYVNDIVL IL +L++  RVLYIDID+HHGD
Sbjct: 139 RKLVQGQTDIAINWSGGLHHAKRGEASGFCYVNDIVLAILNMLRFFPRVLYIDIDIHHGD 198

Query: 736 GVEXAFYTTDRVMT 777
           GV+ AFY +DRV+T
Sbjct: 199 GVQQAFYESDRVLT 212


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
 Frame = +1

Query: 364 KATADEMTKFHSDDYIRFLRSIRPDNVSEYNKQMQRFNVGEDCPVFDGLYEFC-QLSAGG 540
           +AT +E+ + HS +   + R    + +S  ++ +       D   ++    FC +L+ G 
Sbjct: 114 EATLEELLQVHSQEM--YDRVTNTEKMS--HEDLANLEKISDSLYYNNESAFCARLACGS 169

Query: 541 SV--AAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYH----QRV 702
           ++    AV   +  +   +    G HHA+  +  GFC  N++ +    +L+      +RV
Sbjct: 170 AIETCTAVVTGQVKNAFAVVRPPG-HHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKRV 228

Query: 703 LYIDIDVHHGDGVEXAFYTTDRVM 774
           L +D D+HHG+G + AFY    V+
Sbjct: 229 LIVDWDIHHGNGTQMAFYDDPNVL 252


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
 Frame = +1

Query: 394 HSDDYIRFLRSIRPDNVSEYNKQMQRFNVGEDCPVFDGLYEFC----QLSAGGSVAAAVK 561
           H D  I  L + + DN ++Y    ++F++G D     GL         ++ G S A+  +
Sbjct: 143 HLDMLISALVANKGDN-NDYAPNSEKFDLGNDDQGIWGLSAMSAAEVNMTTGDSSASFTE 201

Query: 562 LNKQA-SEICINW-----GGGLHHAKKSEASGFCYVNDIVLGIL-----ELLKYHQRVLY 708
           L +   +EI   W     GGG+     S  +G+ Y N I  GIL      L +Y     Y
Sbjct: 202 LAQAVFNEIMSRWDTSSCGGGVRWQIYSFNNGYSYKNSISNGILFQLAARLARYTNNDTY 261

Query: 709 IDI 717
           +D+
Sbjct: 262 VDL 264


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -3

Query: 608 RPPPQFMQISEACLFSFTAAATEPPADN*QNSYRPSKTGQSSPTLNLCICLLYSETLS 435
           RPP +   +  + L  FT+A T   A     S  PS  G SSP + L   +L+S++ S
Sbjct: 474 RPPNELFDVFISNLLKFTSAETTSSAIRKVQSKYPSMCG-SSPAIKL---ILFSKSFS 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,385
Number of Sequences: 5004
Number of extensions: 61532
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)