Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C21
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   1.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   4.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 400 LNGILSFHQLWLCEAYKSPFFDRV 329
           L+G L + + + C A K+P FDR+
Sbjct: 303 LHGQLLWREFFYCAATKNPNFDRM 326


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 655 H*HNRNLTLQTSLHDGGHHPSLCKFLRPAY 566
           H H  +   +++ H  G +PS   FL P+Y
Sbjct: 287 HSHLSSALGRSACHSPGVYPSTAGFLPPSY 316


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 304 SYVCGEVS-LDALVRNSS--FQYRCHNSNTLFSYC 209
           SY C   S L++ +++ S  +QYRC N      YC
Sbjct: 23  SYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYC 57


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 593 FMQISEACLFSFTAAATEPPADN*QNSYRPSKTGQSS 483
           F  + E  L ++ A+ ++  +DN +  Y PS+T QS+
Sbjct: 316 FGALLEFALVNY-ASRSDMHSDNIEKKYPPSETEQST 351


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 593 FMQISEACLFSFTAAATEPPADN*QNSYRPSKTGQSS 483
           F  + E  L ++ A+ ++  +DN +  Y PS+T QS+
Sbjct: 316 FGALLEFALVNY-ASRSDMHSDNIEKKYPPSETEQST 351


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 355 RPHKATADEMTKFHSDDYIRFLR 423
           + HKA AD+  + H  +Y + L+
Sbjct: 422 KEHKAAADQKLEKHLIEYKKMLK 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,151
Number of Sequences: 438
Number of extensions: 4482
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)