Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C20
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    50   4e-07
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    49   5e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    27   1.6  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    26   3.7  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    25   6.5  
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    25   8.6  

>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 168 CDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQCILSRS--DFDXYYG 341
           C+ C ++  R    +C+ C+D+DLC  C+ SGA+   H   HP + I + S   FD  +G
Sbjct: 8   CNVCAQDITRSIHIRCVECVDFDLCIPCFTSGASLGTHHPSHPYRIIETNSYPIFDENWG 67

Query: 342 GE 347
            +
Sbjct: 68  AD 69


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +3

Query: 153 HEGVSCDSCLKNNFRGRRYKCLICIDYDLCATC 251
           H  V CD+CL +   G R+ CL+C DYDLC++C
Sbjct: 207 HRSVQCDNCLAHPIVGPRFHCLVCEDYDLCSSC 239



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 168 CDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQH 281
           CD C +      RYKC +C DYD+C +C    + +N H
Sbjct: 136 CDHC-EQPIHNVRYKCSVCDDYDICESCLTDNSHSNTH 172



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 120 FQRRSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGA 266
           F+  + +   R   V+C++CLK   R   + C  C D+D+C  CY   A
Sbjct: 46  FEHNNNSPTLRSSSVACNTCLKI-IRNDSFHCTKCFDFDVCRDCYAKQA 93


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 321 DFDXYYGGEALTLEQSQAYTCPFCNRHGFYRHWSH 425
           D D + G +AL  + S  Y+  +  RHG   +W H
Sbjct: 71  DLDFFIGNDALK-KASAGYSLDYPIRHGQIENWDH 104


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 394 TAMGFTDTGLMEHVTAEHADTTLAVVCPVCASMPGGXPNFVTDDXAGHLTL 546
           T  G T   L    +  H D ++ +V P+CA      P  V D  A H+ +
Sbjct: 283 TPTGSTAYSLAAGGSLCHPDISVMIVSPICAHSLSLRPIHVPDSMALHVVI 333


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 214 HLYRRPLKLFFKQESQLTPSWRFI 143
           H YR+PLKL+ K E      W F+
Sbjct: 217 HSYRQPLKLYAKPEELGDMFWPFL 240


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 132 SLAKMNRHEGVS---CDSCLKNNFRGRRYKCLICIDY 233
           SL + +R + +S   CDSC K++ +  +  C+  +D+
Sbjct: 208 SLMEADREQHISDYKCDSCFKSSPKHSKTSCIRTVDW 244


>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 351 LTLEQSQAYTCPFCNRHGFYRHWSH-GACNG 440
           + ++Q   Y CPFC R+   R  +    CNG
Sbjct: 29  IEVQQHSRYQCPFCGRNTVKRTAAGIWCCNG 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,938
Number of Sequences: 5004
Number of extensions: 48248
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)