Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_C20
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14429-1|AAA28219.2| 575|Caenorhabditis elegans Hypothetical pr... 83 2e-16
AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein ( Cae... 57 9e-09
AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin ... 57 9e-09
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 50 1e-06
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 50 1e-06
AL023834-1|CAA19481.1| 177|Caenorhabditis elegans Hypothetical ... 47 1e-05
U61947-2|AAB03135.1| 498|Caenorhabditis elegans Hypothetical pr... 44 9e-05
Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z82055-5|CAB04847.1| 229|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascula... 40 0.001
Z54269-1|CAA91022.2| 815|Caenorhabditis elegans Hypothetical pr... 36 0.017
AC024772-1|AAF60536.2| 242|Caenorhabditis elegans Hypothetical ... 36 0.030
AL021483-7|CAA16344.3| 218|Caenorhabditis elegans Hypothetical ... 33 0.21
Z82265-4|CAB05174.1| 293|Caenorhabditis elegans Hypothetical pr... 29 3.5
>L14429-1|AAA28219.2| 575|Caenorhabditis elegans Hypothetical
protein ZK652.6a protein.
Length = 575
Score = 83.0 bits (196), Expect = 2e-16
Identities = 42/95 (44%), Positives = 51/95 (53%), Gaps = 11/95 (11%)
Frame = +3
Query: 153 HEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQ--------HTTEHPMQCI 308
HEGVSCD C F G RYKCL C DYDLC +C+ + +Q H HPMQ I
Sbjct: 9 HEGVSCDGCAFTAFAGNRYKCLRCSDYDLCFSCFTTKNYGDQQTIADIPIHDESHPMQLI 68
Query: 309 LSRSDFDXYYGGEALTLEQSQ---AYTCPFCNRHG 404
LS DFD Y G+ + ++TCP+CN G
Sbjct: 69 LSSVDFDLVYQGDPTRHYDERKIVSFTCPYCNITG 103
>AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein (
Caenorhabditis elegansmRNA for dystrobrevin. ).
Length = 590
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +3
Query: 129 RSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQ 302
R + N + V CD+C +F G RYKC C +Y LC +C+ G T+ H+ EH M+
Sbjct: 251 RMASVSNVYHPVVCDACQVRSFTGFRYKCQRCANYQLCQSCFWRGRTSQNHSNEHEMK 308
>AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin
homolog protein 1 protein.
Length = 590
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +3
Query: 129 RSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQ 302
R + N + V CD+C +F G RYKC C +Y LC +C+ G T+ H+ EH M+
Sbjct: 251 RMASVSNVYHPVVCDACQVRSFTGFRYKCQRCANYQLCQSCFWRGRTSQNHSNEHEMK 308
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +3
Query: 126 RRSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQ 302
R +++ +H C+ C G RY+CL C + DLC C+ S T H T HPMQ
Sbjct: 3293 RLVISESTKHAS-KCNVCKMFPIIGIRYRCLTCFNCDLCQNCFFSQRTAKSHRTNHPMQ 3350
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +3
Query: 126 RRSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQ 302
R +++ +H C+ C G RY+CL C + DLC C+ S T H T HPMQ
Sbjct: 3293 RLVISESTKHAS-KCNVCKMFPIIGIRYRCLTCFNCDLCQNCFFSQRTAKSHRTNHPMQ 3350
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +3
Query: 126 RRSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQ 302
R +++ +H C+ C G RY+CL C + DLC C+ S T H T HPMQ
Sbjct: 3293 RLVISESTKHAS-KCNVCKMFPIIGIRYRCLTCFNCDLCQNCFFSQRTAKSHRTNHPMQ 3350
>AL023834-1|CAA19481.1| 177|Caenorhabditis elegans Hypothetical
protein Y32B12A.1 protein.
Length = 177
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +3
Query: 153 HEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHT 284
H V CDSC G R+KC IC DYD+C++C E+ QHT
Sbjct: 130 HPIVRCDSCY-TTITGHRFKCTICTDYDICSSC-EARNAHAQHT 171
>U61947-2|AAB03135.1| 498|Caenorhabditis elegans Hypothetical
protein C06G3.6 protein.
Length = 498
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +3
Query: 126 RRSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESG 263
+ S HE SCD C ++ G R+KC IC +YDLC TC +G
Sbjct: 183 KNSFKNKEVHEA-SCDKC-QDLIIGHRFKCAICYNYDLCETCEAAG 226
>Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical
protein T12G3.1 protein.
Length = 693
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +3
Query: 165 SCDSCLKNNFRGRRYKCLICIDYDLCATC 251
SCD+CL + G R+KCL C DYDLC C
Sbjct: 183 SCDACL-GDIIGHRFKCLECADYDLCEKC 210
>Z82055-5|CAB04847.1| 229|Caenorhabditis elegans Hypothetical
protein T26H2.5 protein.
Length = 229
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +3
Query: 168 CDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQH 281
CDSC GRRYKC +C D+D+C C E+ + QH
Sbjct: 146 CDSC-GTQIAGRRYKCTMCADFDICERC-EAKSVHLQH 181
>AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 2
protein.
Length = 518
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/49 (44%), Positives = 22/49 (44%)
Frame = +3
Query: 168 CDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQCILS 314
CD C RYKC IC DYDLC C N H H M ILS
Sbjct: 452 CDECKAECNWNNRYKCTICADYDLCRQC----EAKNLH-ANHAMLRILS 495
>Z54269-1|CAA91022.2| 815|Caenorhabditis elegans Hypothetical
protein F02C12.1 protein.
Length = 815
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 168 CDSCLKNNFRGRRYKCL-ICIDYDLCATCY 254
C SC F G RY C IC DY +CATC+
Sbjct: 99 CASCGSKVFPGLRYVCPEICPDYGICATCF 128
>AC024772-1|AAF60536.2| 242|Caenorhabditis elegans Hypothetical
protein Y40C5A.1 protein.
Length = 242
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 153 HEGVSCDSCLKNNFRGRRYKCLICIDYDLCATC 251
H C +C + G RY CL C DYD+C C
Sbjct: 161 HHDTPCRNCFRI-IVGSRYHCLQCPDYDICGDC 192
>AL021483-7|CAA16344.3| 218|Caenorhabditis elegans Hypothetical
protein Y38H8A.5 protein.
Length = 218
Score = 32.7 bits (71), Expect = 0.21
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Frame = +3
Query: 93 RPFWCQQVFFQRRSLAKMNRHEGVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATT 272
RPF C+ R + + RH+ + DS + +KC C C+ +T
Sbjct: 78 RPFVCKVCGKAFRQASTLCRHKIIHTDS--------KPHKC------KTCGKCFNRSSTL 123
Query: 273 NQHTTEH----PMQCILSRSDF--DXYYGGEALTLEQSQAYTCPFCNR 398
N H H P C + F + Y LT E ++ ++C C+R
Sbjct: 124 NTHVRIHQGFKPFVCEICGKGFHQNGNYKNHRLTHEDTKKFSCSICSR 171
>Z82265-4|CAB05174.1| 293|Caenorhabditis elegans Hypothetical
protein F02H6.6 protein.
Length = 293
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 357 LEQSQAYTCPFCNRHGFYRHW-SHGAC 434
L+ S A CP C R G + W S+G C
Sbjct: 12 LQISNAADCPICPRGGIWSEWTSNGVC 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,937,493
Number of Sequences: 27780
Number of extensions: 295996
Number of successful extensions: 696
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -