Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C13
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   4.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   7.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   7.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 459 SCCVCPCDLSYV 424
           SC VC CD  Y+
Sbjct: 773 SCTVCTCDAKYL 784


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 573 NFINSLTK*IQEKYNVYQMSRILIQQLYVISNFKLSISSCCVCPC 439
           +F++++   + EK NV  +   ++  L V  NF   +S   +C C
Sbjct: 232 DFLDNVDTIMYEKTNVTFVHLAVLNILRVGKNFVCLLSLIILCDC 276


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +2

Query: 647 FGFHYTXNGDKLLHV 691
           +G+HY+ +G ++ H+
Sbjct: 391 YGYHYSGDGGEVAHL 405


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +2

Query: 647 FGFHYTXNGDKLLHV 691
           +G+HY+ +G ++ H+
Sbjct: 339 YGYHYSGDGGEVAHL 353


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,085
Number of Sequences: 336
Number of extensions: 3678
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)