Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C13
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    73   6e-14
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    50   4e-07
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    27   2.8  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   3.8  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    26   6.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.7  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   8.7  

>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
 Frame = +1

Query: 67  AIGXGFVQQXYTLFXAPAQRANLVNMYNVETSFMXFEGVQLQGAVKIMEKLNSLTFQKIT 246
           A+   F Q  Y  F +   R+ L ++Y  E S + FEG QLQG   I+EKL SL FQ++ 
Sbjct: 6   ALATQFTQFYYQTFDS--DRSQLSSLYR-EESMLSFEGAQLQGTKAIVEKLVSLPFQRVQ 62

Query: 247 RIVTAVDSQPM-FDGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 414
             ++ +D+QP    G V++ V G L  DE+     Y Q F L     ++YV +D+FRL
Sbjct: 63  HRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFRL 120


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
 Frame = +1

Query: 70  IGXGFVQQXYTLFXAPAQRANLVNMYNVETSFMXF---EGVQL-QGAVKIMEKLNSLTFQ 237
           IG  FVQ+ YT       R +    Y  +++ +     E + L  G  +I  K+  L FQ
Sbjct: 18  IGWMFVQEYYTYLNKEPNRLHC--FYTKKSTLIHGDEGESISLCHGQQEIHNKILDLDFQ 75

Query: 238 KITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFRLG 417
               +++ VDS    +GG++I VLG +         + QTF L    + ++V +DIFR  
Sbjct: 76  NCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPNGYFVLNDIFRFL 135

Query: 418 IHDI 429
             D+
Sbjct: 136 REDV 139


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 512 LDIW-YTLYFSCIYFVKEFMKLKGRDDYEIMIMIDLVI 622
           LDIW + + F+ + F K+    +GRD+Y+ ++ I  V+
Sbjct: 217 LDIWSFGVMFAALIFKKDTF-FRGRDNYDQLVKIAKVL 253


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 668 FXCNENQILIL-DYPVRSLNRSLS*FHNRLV 579
           F C  +Q+L+  D  V SLN+ ++ FH +L+
Sbjct: 245 FACRSSQLLVSEDNVVSSLNKLINDFHGKLI 275


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -2

Query: 422 WMPKRKMSC*T*NESPSGFNTNVCMYRCGGSSSHFNLPRTLIKTPPSNIGWESTAVTILV 243
           W  + K  C +   SP G N+++ +YR    +  F++P   I       GW     TI+ 
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAID------GWGQDLRTIMA 436

Query: 242 I 240
           I
Sbjct: 437 I 437


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 521 WYTLYFSCIYFVKEFMKLKGRDDYEIMIMIDLVIEQGNL 637
           W + +   I F KEF  L  RD   +  +I ++  QGN+
Sbjct: 206 WNSFFAHFIAFGKEFQLLDKRDTAPLKDLIVVLENQGNI 244


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 368  FNTNVCMYRCGGSSSHFNLPRTLIKTPPSNIGWEST 261
            F+   C+Y    S   F+  R L+  PPS I  +ST
Sbjct: 1267 FSILTCIYNRITSGQGFSYSRLLVYLPPSQIEKKST 1302


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 540 EKYNVYQMSRILIQQLYVISNFKLSISSCCVCP 442
           E +   +M  +L  +LY ISN  LSI+   + P
Sbjct: 410 EDFTYQRMKTVLDDELYTISNTNLSITDDLLPP 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,615
Number of Sequences: 5004
Number of extensions: 60890
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)