Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_C13
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1376 - 26528208-26528279,26529690-26529986 74 1e-13
01_06_0963 + 33441731-33442096,33442175-33442270 52 6e-07
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129... 46 4e-05
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 45 6e-05
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 34 0.14
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421... 28 6.9
>08_02_1376 - 26528208-26528279,26529690-26529986
Length = 122
Score = 73.7 bits (173), Expect = 1e-13
Identities = 47/118 (39%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Frame = +1
Query: 67 AIGXGFVQQXYTLFXAPAQRANLVNMYNVETSFMXFEGVQLQGAVKIMEKLNSLTFQKIT 246
A+ FV+ Y F R LV++Y + S + FEG Q GA I KL SL F +
Sbjct: 5 AVAKAFVEHYYRTFDT--NRPALVSLYQ-DGSMLTFEGQQFLGAAAIAGKLGSLPFAQCH 61
Query: 247 RIVTAVDSQPMF-DGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 414
+ VD QP GG+L+ V G L+ D P + Q F L P G +FYVQ+D+FRL
Sbjct: 62 HDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMFRL 119
>01_06_0963 + 33441731-33442096,33442175-33442270
Length = 153
Score = 51.6 bits (118), Expect = 6e-07
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +1
Query: 58 QSXAIGXGFVQQXYTLFXAPAQRANLVNMYNVETSFMXFEGVQLQGAVKIMEKLNSLTFQ 237
Q + FV+ Y F RA L +Y +TS + FEG + GA +I KL L F+
Sbjct: 24 QCDVVARAFVEYYYQTFDT--NRAALAALYG-QTSMLSFEGHMVAGAEEIGRKLLGLPFE 80
Query: 238 KITRIVTAVDSQPM--FDGGVLINVLGRLKCDEDPPHLYMQTF 360
+ V VD QP F GG+L+ V G L+ + L F
Sbjct: 81 QCRHAVCTVDCQPTPSFPGGILVFVSGNLQLAGEEHQLRFSQF 123
>02_03_0315 -
17610605-17610855,17611304-17611370,17612876-17612941,
17613037-17613158,17613245-17613428,17614262-17614494,
17614580-17614913,17615043-17615186,17615303-17615344
Length = 480
Score = 45.6 bits (103), Expect = 4e-05
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Frame = +1
Query: 52 NPQSXAIGXGFVQQXYTLFXAPAQRANLVNMYNVETSFMXFEGVQLQG---AVKIMEKLN 222
+P + +G FVQQ Y + Q +LV + + S + G +V ME +N
Sbjct: 9 SPSAQVVGNAFVQQYYQILH---QSPDLVYRFYQDASRLGRPPADRYGDMVSVTTMEAIN 65
Query: 223 S-LTFQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQ 396
+ ++R + VDSQ GGV + V G L + + Q+F L P ++V
Sbjct: 66 EKIMAMDMSRAEIKTVDSQESLGGGVTVLVTGHLTVRDGVCREFSQSFFLAPQEKGYFVL 125
Query: 397 HDIFR 411
+D+FR
Sbjct: 126 NDMFR 130
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 45.2 bits (102), Expect = 6e-05
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Frame = +1
Query: 55 PQSXAIGXGFVQQXYTLFXAPAQRANLVNMYNVETSFMX---FEGVQLQGAVKIMEKLNS 225
P + +G FV Q Y + Q +LV+ + + S + V ME +N+
Sbjct: 18 PSAQVVGNAFVHQYYNILH---QSPDLVHRFYQDGSRIGRPASPAAAEMDTVTTMEAINA 74
Query: 226 -LTFQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQH 399
+ I R + AVD+Q GGV + V G L +D + Q+F L P ++V +
Sbjct: 75 KIVSMDIVRAEIKAVDAQESLGGGVTVLVTGHLTGSDDVRREFSQSFFLAPQEKGYFVLN 134
Query: 400 DIFR 411
DI R
Sbjct: 135 DILR 138
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 33.9 bits (74), Expect = 0.14
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Frame = +1
Query: 49 LNPQSXAIGXGFVQQXYT-LFXAPAQRANLVNMYNVETSFMXFEGVQLQGAVKIMEKLN- 222
L+PQ IG FVQQ Y L +P Q + Y+ ++ + +V + +N
Sbjct: 12 LSPQM--IGNAFVQQYYNVLHSSPGQ---VCKFYHDSSTLGRPDSNGTMTSVTTLTAIND 66
Query: 223 ---SLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPL-GDSFY 390
S F + VD+Q +GGV I V G + + H + Q+F L P ++
Sbjct: 67 EFLSTDFSSCLIKLENVDAQLSLNGGVHILVTGSIGHNGTMRHRFSQSFFLAPQESGGYF 126
Query: 391 VQHDIFR 411
V +D+ R
Sbjct: 127 VLNDMLR 133
>03_04_0091 +
17241555-17241602,17241685-17241822,17241901-17242198,
17242281-17242513,17242632-17242827,17242911-17243032,
17243100-17243165,17243373-17243436,17243851-17244176
Length = 496
Score = 28.3 bits (60), Expect = 6.9
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 241 ITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFY-VQHDIFR 411
+T I TA D+Q GVLI V G L E + Q+F L P Y V +DIFR
Sbjct: 77 LTEIETA-DAQLSHQDGVLIVVTGSL-TSEGICRRFTQSFFLAPQESGGYVVLNDIFR 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,136,354
Number of Sequences: 37544
Number of extensions: 351247
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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