Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C13
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical pr...   107   6e-24
AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related ...    31   1.1  
AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related ...    31   1.1  
AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related ...    31   1.1  

>Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical
           protein R05D11.3 protein.
          Length = 133

 Score =  107 bits (258), Expect = 6e-24
 Identities = 50/132 (37%), Positives = 83/132 (62%), Gaps = 4/132 (3%)
 Frame = +1

Query: 43  MALNPQSXAIGXGFVQQXYTLFXAP---AQRANLVNMYNVETSFMXFEGVQLQGAVKIME 213
           M+ NP   ++   F+Q  Y+ F      ++   L ++Y+ E S+M FEG Q +G   I++
Sbjct: 1   MSFNPDYESVAKAFIQHYYSKFDVGDGMSRAQGLSDLYDPENSYMTFEGQQAKGRDGILQ 60

Query: 214 KLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD-SFY 390
           K  +L F KI R +T +DSQP++DG + + VLG+LK DEDP + + Q F+L+P    S++
Sbjct: 61  KFTTLGFTKIQRAITVIDSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQGSYF 120

Query: 391 VQHDIFRLGIHD 426
           + ++IFRL +H+
Sbjct: 121 IGNEIFRLDLHN 132


>AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related
           export protein NXT1 protein.
          Length = 137

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 286 GGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 411
           GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 93  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


>AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform b protein.
          Length = 131

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 286 GGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 411
           GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 87  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 128


>AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform a protein.
          Length = 137

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 286 GGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 411
           GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 93  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,713,217
Number of Sequences: 27780
Number of extensions: 348135
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)