Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C13
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.75 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.3  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -1

Query: 282 KHWLGIHSSYYSSDFL---KSQTI*FFHNFNSTLQLYS---LKGHE*SFNIVHINKICPL 121
           K+WL +H+SY S   L   K  +I  +H + +   L     LK    +  I++   +  +
Sbjct: 436 KNWLPVHTSYKSGLNLEQEKKDSISHYHLYTNLTALRKRDVLKKGNFTIEILNKTVLAVV 495

Query: 120 SRSXEQCVXLL 88
            +S E+ V LL
Sbjct: 496 RQSEEEAVSLL 506


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 276 WLGIHSSYYSSDFLKSQT 223
           W+GIH    +SD   +QT
Sbjct: 353 WMGIHEPETTSDATSAQT 370


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 276 WLGIHSSYYSSDFLKSQT 223
           W+GIH    +SD   +QT
Sbjct: 353 WMGIHEPETTSDATSAQT 370


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 545 YKKNIMCTKCQEF 507
           YK N+ C KC  +
Sbjct: 144 YKSNLKCDKCSTY 156


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 338 GGSSSHFNLPRTLIKTPPSNIG 273
           G S    NL   L+  PP N G
Sbjct: 364 GSSIPKLNLSTALMSQPPPNFG 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,413
Number of Sequences: 438
Number of extensions: 4765
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)