Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C12
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    28   1.9  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    27   2.5  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   5.7  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   5.7  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   7.5  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   9.9  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   9.9  

>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -1

Query: 487 FGHQFVAERLLVFLADVIEQRVGSLIVDVPGEADVVVLPADDAEAGRRHLDAVGVVL 317
           F  +F+    L  L  +  ++V   ++ +    +  V+PA D   GR  + AVG VL
Sbjct: 41  FALKFILICFLAVLEALSSRQVDYAVLPIENSTNGAVIPAYDLLKGRDDIQAVGEVL 97


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 674 KRIHCPEQLIVIPFTNIPNRYRVITMLYEDS 582
           + +H P  +   P    PN Y ++T LY +S
Sbjct: 103 RNVHVPFLIPSFPSITFPNHYTIVTGLYPES 133


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 356 FRVVGRKYDDVSLTGHVNYETPYALLNNISQKYKESFGDELMTKL 490
           +RV+  +Y D+   GH+     YA+L+ +      S  D++ T+L
Sbjct: 470 WRVMLAQYGDIE-DGHIGKLGMYAVLDTLGSNIPNSMVDDIYTEL 513


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 204 HVCASSTRSALMSLELYYSDLIHFCESSP 118
           H+C   +  ++   +++YS L+ F +SSP
Sbjct: 220 HICKIDSSLSVAVFQVFYSPLLDFFKSSP 248


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 597 HCDDSVPIGNVSERYHN*LLRTMYSFCFLVFVSVLQRGEMLAPXILGEF 743
           H D+SVP  ++  +  N L+R +  F   ++++  +    +A  I G F
Sbjct: 516 HMDESVPFDDLIYKLQNILVRELTDFTTGIYINESKINLDVAACITGNF 564


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 33  GKTTCFKLSNIYENKKYFGCSNGPAINFKGCFHKSELN-PNNTTQ 164
           G+TT    S+ + N      +N P  NF+   H +EL   +NT+Q
Sbjct: 616 GETTALPYSSRFMNPVENRSANSPFDNFQHIDHSTELGYASNTSQ 660


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 593 YEDSDLEYRKSSESKPRCSSQNVLIGP 513
           Y D D E  K S  + R  S+NVL  P
Sbjct: 83  YSDEDDENEKGSSGRKRKKSKNVLAEP 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,084
Number of Sequences: 5004
Number of extensions: 41787
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)