Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C10
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    29   0.61 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.2  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.6  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   7.5  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   7.5  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   9.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.9  

>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +2

Query: 506 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 616
           EEKR+++EE++K  + +LQA  +  K   N  + KKS
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKS 172


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 352 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 236
           P+FA  +   L LF+Q+ P + +    FW S+ L+  +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 167 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNVES 66
           CW  I    G S  L+  AL+L PA+    NV S
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNVLS 325


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 618 SLFFWMVKLGPVLLASFMAWSIAW 547
           SL+FW   L P    +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 590 PNFTIQKKSENFGLSNAXLERN 655
           P FTI++K +NF ++N   ERN
Sbjct: 490 PGFTIEQKDKNFSINN---ERN 508


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 269 EFIKRQDQKRSDLDEQLKEY 328
           E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 160 CLLSVARVEVGHSVTRHWFLDRQH 89
           C L +  +   +++ R W L R+H
Sbjct: 80  CCLQILGIATSYTILRSWLLSRKH 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,296
Number of Sequences: 5004
Number of extensions: 22308
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)