Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C10
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t pr...    36   0.034
AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t pr...    36   0.034
U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    28   6.9  

>AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t
           protein 4, isoform b protein.
          Length = 308

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 29/127 (22%), Positives = 49/127 (38%)
 Frame = +2

Query: 257 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 436
           EG+   +  + +  +D   +L++Y    R +R             QA+RK++        
Sbjct: 46  EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105

Query: 437 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 616
                                  EEK+++ EE  KK Q M+       + G NF IQKK 
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164

Query: 617 ENFGLSN 637
           E+ G+ +
Sbjct: 165 ESAGVGD 171


>AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t
           protein 4, isoform a protein.
          Length = 347

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 29/127 (22%), Positives = 49/127 (38%)
 Frame = +2

Query: 257 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 436
           EG+   +  + +  +D   +L++Y    R +R             QA+RK++        
Sbjct: 46  EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105

Query: 437 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 616
                                  EEK+++ EE  KK Q M+       + G NF IQKK 
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164

Query: 617 ENFGLSN 637
           E+ G+ +
Sbjct: 165 ESAGVGD 171


>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 500 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENF 625
           D E+ ++ ++E EK +   L      S  GP  T +K+ +NF
Sbjct: 514 DFEDMKEGVKEKEKVKDVDLNLAGWGSWVGPGMTEKKRRQNF 555


>U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical
           protein M02B7.5 protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 279 SVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNAL 383
           S+K  +G        N+STNG N+   RR+S N+L
Sbjct: 594 SMKLSNGSNSSAGSSNSSTNGVNNSSFRRLSFNSL 628


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +2

Query: 506 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAXLERNKTKE 667
           +EK+Q+L+E EK+R+ + Q  ++          ++ +E+    ++  ++ K +E
Sbjct: 216 KEKKQKLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDEEDSRKDQRKPRE 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,423,806
Number of Sequences: 27780
Number of extensions: 134009
Number of successful extensions: 603
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)