Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_C06
         (395 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4H3U0 Cluster: CCAAT enhancer binding protein alpha/ga...    34   1.1  
UniRef50_Q54P65 Cluster: Putative uncharacterized protein; n=1; ...    31   8.1  

>UniRef50_Q4H3U0 Cluster: CCAAT enhancer binding protein alpha/gamma
           homolog; n=1; Ciona intestinalis|Rep: CCAAT enhancer
           binding protein alpha/gamma homolog - Ciona intestinalis
           (Transparent sea squirt)
          Length = 312

 Score = 33.9 bits (74), Expect = 1.1
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 137 CSSSLSNLIPSPMMYNHYNVSKVSPL--QSKLHFYFE 241
           C+S+ S+  PSP+ YN YN   V+P   QS  H  F+
Sbjct: 100 CASACSSAAPSPVPYNFYNTPPVTPQRPQSPHHLQFD 136


>UniRef50_Q54P65 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 757

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 219 VNSIFILKKNKVIIFVTKIGRP*CFFLASKFYIMSNKINW 338
           +N I    KN++I F T I +   F+L   F I  NK NW
Sbjct: 56  LNEIKRYCKNRIITFETNIPKENNFYLLYHFIIWKNKNNW 95


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,557,775
Number of Sequences: 1657284
Number of extensions: 5156729
Number of successful extensions: 10588
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10588
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)