Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_C03
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 218 6e-58
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 133 3e-32
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 108 8e-25
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 97 2e-21
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 89 9e-19
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 83 4e-17
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 79 9e-16
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 77 3e-15
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 76 5e-15
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 75 1e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 75 1e-14
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 67 2e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 66 4e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 65 1e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 64 2e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 62 7e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 60 3e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 60 3e-10
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 58 2e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 57 2e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 55 1e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 44 2e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.003
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.003
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 36 0.005
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.24
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.3
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 3.0
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.0
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 4.0
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 5.2
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 5.2
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 6.9
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 6.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.2
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 218 bits (533), Expect = 6e-58
Identities = 100/175 (57%), Positives = 126/175 (72%)
Frame = +2
Query: 251 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 430
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 431 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 610
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 611 PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDL 775
P + GDGPI LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RDL
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDL 242
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 133 bits (321), Expect = 3e-32
Identities = 63/171 (36%), Positives = 101/171 (59%), Gaps = 1/171 (0%)
Frame = +2
Query: 266 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 442
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 443 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 622
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 623 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDL 775
G+GPIA+++ PTRELA QI + F +R C +GGAP + Q DL
Sbjct: 488 TGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADL 538
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 108 bits (260), Expect = 8e-25
Identities = 53/131 (40%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
Frame = +2
Query: 362 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 541
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 542 VAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHT 712
+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP 351
Query: 713 SYVRNTCVFGG 745
R V GG
Sbjct: 352 LGFRCVSVVGG 362
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 97.5 bits (232), Expect = 2e-21
Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 3/142 (2%)
Frame = +2
Query: 353 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 523
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 524 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 703
G+++VG+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q +
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSL 259
Query: 704 GHTSYVRNTCVFGGAPKRXQAR 769
+ ++ V+GGAPK QAR
Sbjct: 260 IQGTNLKAVVVYGGAPKSEQAR 281
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 88.6 bits (210), Expect = 9e-19
Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 13/146 (8%)
Frame = +2
Query: 377 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 556
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 557 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQVAA 697
SGKT ++ P + + + P P+ + G P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 698 DFGHTSYVRNTCVFGGAPKRXQARDL 775
F + S+VR V+GGA R Q R +
Sbjct: 277 KFCYRSWVRPCAVYGGADIRAQIRQI 302
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 83.0 bits (196), Expect = 4e-17
Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Frame = +2
Query: 419 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 598
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 599 I-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQA 766
+ NN P A+VLAPTRELA QI + G + VR+ + GG QA
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQA 158
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 78.6 bits (185), Expect = 9e-16
Identities = 39/115 (33%), Positives = 64/115 (55%)
Frame = +2
Query: 419 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 598
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 599 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQ 763
+ + AL+L+P RELA Q +V DF + +R+ + GG Q
Sbjct: 131 LKS---TLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQ 182
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 77.0 bits (181), Expect = 3e-15
Identities = 48/145 (33%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Frame = +2
Query: 347 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 526
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 527 KNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 700
++++G A+TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
Query: 701 FGHTSYVRNTCVFGGAPKRXQARDL 775
+ V GGA +R +A L
Sbjct: 184 LLKYHHQTFGIVIGGANRRAEADKL 208
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 76.2 bits (179), Expect = 5e-15
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +2
Query: 389 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 568
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 569 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 691
AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 74.9 bits (176), Expect = 1e-14
Identities = 40/119 (33%), Positives = 65/119 (54%)
Frame = +2
Query: 419 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 598
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 599 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDL 775
+ +P ++ L+L PTRELA Q VA + + GG + Q ++L
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQEL 377
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 74.9 bits (176), Expect = 1e-14
Identities = 39/94 (41%), Positives = 55/94 (58%)
Frame = +2
Query: 419 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 598
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 599 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 700
+ + G G AL++APTRELA QI V +
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 67.3 bits (157), Expect = 2e-12
Identities = 36/113 (31%), Positives = 61/113 (53%)
Frame = +2
Query: 419 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 598
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 599 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKR 757
++ + + L+L PTRELA Q QV G V+ GG R
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLR 153
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 66.5 bits (155), Expect = 4e-12
Identities = 41/119 (34%), Positives = 59/119 (49%)
Frame = +2
Query: 419 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 598
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 599 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDL 775
+ P G AL+L PTRELA QI + A G +++ + GG Q+ DL
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDL 122
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 64.9 bits (151), Expect = 1e-11
Identities = 34/107 (31%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Frame = +2
Query: 410 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 583
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 584 PAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 724
+ ++ P P A+ LAP+RELA+QI V + G + V+
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 64.1 bits (149), Expect = 2e-11
Identities = 41/131 (31%), Positives = 63/131 (48%)
Frame = +2
Query: 353 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 532
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 533 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 712
++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRL 137
Query: 713 SYVRNTCVFGG 745
+ GG
Sbjct: 138 HSFSAGLIIGG 148
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 62.5 bits (145), Expect = 7e-11
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Frame = +2
Query: 353 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 532
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 533 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-H 709
++ AQ+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDH 115
Query: 710 TSYVRNTCVFG 742
+ + C+ G
Sbjct: 116 MNVQCHACIGG 126
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 60.5 bits (140), Expect = 3e-10
Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Frame = +2
Query: 272 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 445
D++ L N F + P P++ ++ +++ K + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEG 55
Query: 446 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 622
+ + +K E T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113
Query: 623 RGDGPIALVLAPTRELAQQIQQVA 694
G A+++APTREL +QI + A
Sbjct: 114 --GGYRAIIVAPTRELCEQIYRQA 135
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 60.1 bits (139), Expect = 3e-10
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Frame = +2
Query: 470 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 643
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 644 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQAR 769
LV+APTRELA QI Q + +R + GG + Q R
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQR 237
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 57.6 bits (133), Expect = 2e-09
Identities = 34/112 (30%), Positives = 59/112 (52%)
Frame = +2
Query: 410 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 589
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 590 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 745
+ I+ +++ AL+LAPTRELAQQIQ+V G V GG
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACIGG 124
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 57.2 bits (132), Expect = 2e-09
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Frame = +2
Query: 467 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPP--IRRGDG 634
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 635 PIALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKRXQ 763
A+++APTREL QQI VA + + ++ + V GG K+ +
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSE 262
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 54.8 bits (126), Expect = 1e-08
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Frame = +2
Query: 386 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 562
S ++ P + E A+ + + G+++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 563 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 742
KTLA++L A + P +++L+PTRELA QI + A + + +R + G
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIG 148
Query: 743 GAPK 754
G K
Sbjct: 149 GNSK 152
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.0 bits (99), Expect = 2e-05
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Frame = +2
Query: 452 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 631
+ + G++ P+ +Q P ++ G +++ A++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 632 GPIA-LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGG 745
G ++ LVL TRELA QI+ A F + VR +GG
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGG 157
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 530 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 682
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 530 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 682
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +2
Query: 509 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 682
P+ G ++ A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.24
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 518 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 676
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 467 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 607
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 27.1 bits (57), Expect = 3.0
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +2
Query: 377 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 556
V V VE PI Y GV +GY + P G P+ ++GK + V
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTV---- 308
Query: 557 SGKTLAYILPAIVHINNQPPIRRGD 631
GK +L + + + P ++RGD
Sbjct: 309 -GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 481 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 356
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 4.0
Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Frame = -3
Query: 517 SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILFDFIW* 338
+Y L +G H L ++ + F K ++ + + SY++ + + +W
Sbjct: 686 AYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVLILCPVHPIVWK 745
Query: 337 SFENCRMWIIKVFVERLE*NRIPIWAS----HVLPSREFFFPTKASRSSKSIATVAKPRR 170
+ F L+ NR+ I AS H+ ++ F + ++ + R
Sbjct: 746 G--RIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQSISGDLVTLAVECRSSITR 803
Query: 169 IIAEFVASSKFGTTVSTAII 110
+ EF+ SK +S+ ++
Sbjct: 804 VYKEFIRLSKLCMRISSTVV 823
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 341 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 472
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 341 PYEVEEYRNKHEVTVS 388
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 316 WIIKVFVERLE*NRIPIWASHVLPSREF 233
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -2
Query: 170 NYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI-LSDXRV-HLDH 18
NY I C L +WN Y +F + +++W+ S+ V H DH
Sbjct: 180 NYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWLEFSELVVQHPDH 232
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 470 PLSLHLVAHNQENL--LLQSIE 411
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,213
Number of Sequences: 5004
Number of extensions: 68307
Number of successful extensions: 232
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -