Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_B24
         (508 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit...    38   0.17 
UniRef50_UPI0000DC2038 Cluster: UPI0000DC2038 related cluster; n...    35   0.92 
UniRef50_UPI0000F1D639 Cluster: PREDICTED: similar to ring finge...    32   6.5  
UniRef50_Q4YFH0 Cluster: Putative uncharacterized protein; n=1; ...    32   6.5  
UniRef50_A7RY18 Cluster: Predicted protein; n=1; Nematostella ve...    32   6.5  

>UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit
           RPC1; n=6; Eukaryota|Rep: DNA-directed RNA polymerase
           III subunit RPC1 - Plasmodium falciparum
          Length = 2339

 Score = 37.5 bits (83), Expect = 0.17
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 465 NMTLQRCLSHFXMLQFNWNAQHVNYVTFYLHVVY-IAVYCFSL 340
           N  L  C  HF  ++ N+   H+ Y  + +H++Y I  YC SL
Sbjct: 92  NKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSL 134


>UniRef50_UPI0000DC2038 Cluster: UPI0000DC2038 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC2038 UniRef100 entry -
           Rattus norvegicus
          Length = 184

 Score = 35.1 bits (77), Expect = 0.92
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = -1

Query: 409 CPA--RKLCHILFACCVHCCLLFFIADRLRTNIQCCQPFKL----FKCSGLYXTN 263
           CP+  R LC     CC HCC  +     +  + +CCQP +       C+G Y  N
Sbjct: 55  CPSSCRGLC-CAKGCCCHCCCCYCCCAPVACSSECCQPVQCQCIQVSCAGSYCVN 108


>UniRef50_UPI0000F1D639 Cluster: PREDICTED: similar to ring finger
           protein 31,; n=1; Danio rerio|Rep: PREDICTED: similar to
           ring finger protein 31, - Danio rerio
          Length = 848

 Score = 32.3 bits (70), Expect = 6.5
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 379 FACCVHCCL-LFFIADRLRTNIQCCQPFKLFKC 284
           F  C HCC  L   ADRLR +   C     FKC
Sbjct: 532 FRWCAHCCFGLLHEADRLRMDCPSCGKSTCFKC 564


>UniRef50_Q4YFH0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 83

 Score = 32.3 bits (70), Expect = 6.5
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 444 LSHFXMLQFNWNAQHVNYVTFYLHV-VYIAVYCF 346
           L  F ++  N    H++Y+TFYLH+ +YI +Y +
Sbjct: 42  LIFFFVVLCNIYCFHISYITFYLHIYIYIYIYIY 75


>UniRef50_A7RY18 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 150

 Score = 32.3 bits (70), Expect = 6.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 391 CHILF---ACCVHCCLLFFIADRLRTNIQCCQPFKLFKC 284
           C++LF    CC+ CC + FI    +  I+CC  + LF C
Sbjct: 14  CYLLFFCYKCCIECCYMLFIC--YKCCIECC--YMLFFC 48



 Score = 31.9 bits (69), Expect = 8.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 391 CHILF---ACCVHCCLLFFIADRLRTNIQCCQPFKLFKC 284
           C++LF    CC+ CC + FI    +  I+CC  + LF C
Sbjct: 56  CYMLFFCYKCCIECCYMLFIC--YKCCIECC--YMLFIC 90



 Score = 31.9 bits (69), Expect = 8.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 391 CHILFAC---CVHCCLLFFIADRLRTNIQCCQPFKLFKC 284
           C++LF C   C+ CC + FI    +  I+CC  + LF C
Sbjct: 70  CYMLFICYKCCIECCYMLFIC--YKCCIECC--YMLFFC 104



 Score = 31.9 bits (69), Expect = 8.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 391 CHILF---ACCVHCCLLFFIADRLRTNIQCCQPFKLFKC 284
           C++LF    CC+ CC + FI    +  I+CC  + LF C
Sbjct: 98  CYMLFFCYKCCIECCYMLFIC--YKCCIECC--YMLFIC 132



 Score = 31.9 bits (69), Expect = 8.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 391 CHILFAC---CVHCCLLFFIADRLRTNIQCCQPFKLFKC 284
           C++LF C   C+ CC + FI    +  I+CC  + LF C
Sbjct: 112 CYMLFICYKCCIECCYMLFIC--YKCCIECC--YMLFFC 146


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,588,066
Number of Sequences: 1657284
Number of extensions: 7475882
Number of successful extensions: 17138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17122
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)