Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_B24
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0149 - 20636801-20637044,20637859-20639180                       30   0.93 
03_01_0651 - 4767836-4767856,4768111-4768457,4768582-4768751,476...    30   0.93 
05_05_0200 - 23171803-23171906,23172304-23173951                       29   2.8  
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985...    28   5.0  

>11_06_0149 - 20636801-20637044,20637859-20639180
          Length = 521

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 104 AVFRFLKMDLCRQDKPTRRRSYEDGGLNEPKKNQKNTXNIS 226
           + F  L +   R  KP+RRR    GG   PKK  K+   ++
Sbjct: 3   SAFHSLLLPAIRNPKPSRRRGRGRGGSKRPKKTTKSKNRLA 43


>03_01_0651 -
           4767836-4767856,4768111-4768457,4768582-4768751,
           4768848-4769162,4769758-4769882,4770743-4771036
          Length = 423

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 168 YDLLRVGLSCLHRSIFKKRNTASTERPAVTGE*SR*TRGSFLPMLKP-WCXHYRDV 4
           YDLL++G S  H    K  +   T + A+T      T  SFL M +P WC   +D+
Sbjct: 310 YDLLKIGGSDFHGRGGKDESDIGTVKLAIT------TLCSFLKMARPIWCSAMKDI 359


>05_05_0200 - 23171803-23171906,23172304-23173951
          Length = 583

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 420 FNWNAQHVNYVTFYLHVVYIAVYCFSLPIVCVRISNAVNHSSYLNARDCTKLT 262
           F WN Q + +   Y+H+    ++C + P     ++ AVN ++  N R+   LT
Sbjct: 350 FGWNMQRLGFGNMYVHIATFMLFCLA-PFFIFNLA-AVNINNE-NLREALGLT 399


>01_02_0089 -
           10997882-10997957,10998139-10998423,10998519-10998589,
           10998685-10998761,10998858-10998963,10999062-10999189,
           10999291-10999423,11000005-11000133,11000220-11000375,
           11000770-11000846,11000938-11000998,11001249-11001383,
           11001642-11001765,11001852-11001917,11002010-11002112,
           11002603-11002652,11003795-11003895
          Length = 625

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 406 PARKLCHILFACCVHCCLLFFIADRLRTNIQCCQPFKLFKCS 281
           PA  L  +L  CC  CC +  + ++L   I CC   K  KCS
Sbjct: 5   PAHALL-VLLLCC-SCCSVRHLLEQLARRIPCCWDAK--KCS 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,884,542
Number of Sequences: 37544
Number of extensions: 201497
Number of successful extensions: 468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)