Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_B24
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)                    28   3.8  
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_42940| Best HMM Match : TB (HMM E-Value=5.2)                        27   8.9  

>SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)
          Length = 1103

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 487  SNVHFIMXHDITEMSFTFXNASVQLECPARKLCHILFA 374
            S  ++I  H   E + TF NA V L CPA  L  +L A
Sbjct: 960  SQENWIGCHLGVEQAVTFSNARVTLACPALGLIMLLHA 997


>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1399

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 95  RDQQ*QENEVGEHEVRSFR 39
           RD + Q+NEV + EVRSFR
Sbjct: 334 RDYKRQQNEVEQEEVRSFR 352


>SB_42940| Best HMM Match : TB (HMM E-Value=5.2)
          Length = 153

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 79  CYCWSLCGCC 108
           C CW++C CC
Sbjct: 9   CSCWTMCSCC 18


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,241,136
Number of Sequences: 59808
Number of extensions: 254854
Number of successful extensions: 742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)