Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_B23
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975...    46   3e-05
03_05_1002 - 29594462-29594581,29594686-29594781,29594857-295949...    33   0.26 
11_05_0091 - 18982390-18982948,18983088-18983173                       32   0.34 
10_08_0974 + 21969713-21971914                                         31   1.0  
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051...    29   2.4  
04_03_0879 + 20508414-20510051                                         29   3.2  
03_02_0153 - 5961910-5962441,5962779-5963128,5963415-5963681,596...    29   4.2  
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817           28   7.4  

>03_02_0602 +
           9759055-9759223,9759305-9759455,9759548-9759593,
           9759974-9760033,9760519-9760555,9761268-9761347,
           9761413-9761516,9761613-9761673,9762962-9763019,
           9763866-9763918,9764357-9765320,9766131-9766185,
           9767223-9768786
          Length = 1133

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
 Frame = +3

Query: 174 SGEVLELKSFWEQQNVAIVFFRRWGCMFCRLWAKELXEIAPILKQHNIKLVGVG---VEE 344
           SG+ + +   W+ +   + F R +GC+ CR  A  L      ++   + LV +G   VE+
Sbjct: 83  SGKAVPVVDLWKDRKAIVAFARHFGCVLCRKRADLLAAKQDAMEAAGVALVLIGPGTVEQ 142

Query: 345 AGSKEFSEGKFFDGDLYYVENISTYQQLGFKRFNILTILTSLLWKQS 485
           A  K F +   F G++Y   + S+Y  L F  F + +  T  L+ Q+
Sbjct: 143 A--KAFYDQTKFKGEVYADPSHSSYNALEF-AFGLFSTFTPSLYPQA 186


>03_05_1002 -
           29594462-29594581,29594686-29594781,29594857-29594916,
           29595574-29595618,29595956-29596070,29596200-29596246,
           29596529-29596822
          Length = 258

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 144 IGTQKVRNVSSGEVLELKSFWEQ-QNVAIV-FFRRWGCMFCRLWAKELXEIAPILKQHNI 317
           +G   + + ++GE +  +  W+Q + +A+V   R +GC  C   A  L +         +
Sbjct: 74  LGGVAIYSAATGEPVLFRDLWDQNEGMAVVALLRHFGCPCCWELASVLRDTKERFDSAGV 133

Query: 318 KLVGVGV 338
           KL+ VGV
Sbjct: 134 KLIAVGV 140


>11_05_0091 - 18982390-18982948,18983088-18983173
          Length = 214

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 391 RSPSKNFPSLNSLDPASS-TPTPTSLMLCCLRIGAISXNSLAQSLQNMQPQRRKNT 227
           RSPS   P   SL P+ S +PTP S   CCL  G ++ NS   S     P +R+ T
Sbjct: 121 RSPSSRSPL--SLQPSPSPSPTPDSATPCCL-TGRLADNSTLNSDTPGTPAQRRLT 173


>10_08_0974 + 21969713-21971914
          Length = 733

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 598 WRSKFPPFSTRTAPPT*TQSPFMSPLKPXXFPFEMASRD 482
           W S F P  T  APP  + SPF+S L+     ++ A  D
Sbjct: 76  WVSSFRPQPTAAAPPPPSLSPFLSRLELWVLAYQKAYAD 114


>12_02_0633 +
           21402847-21402862,21403143-21404975,21405052-21405170,
           21405288-21405722
          Length = 800

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 81  KNFXINHKSEQKLKMSPDIXQIGTQK-VRNVSSGEVLELKSFWEQQNVAIVFF 236
           K+   N K   +L  S ++ Q+G  K  +   + +V+  ++FW+  N+A+ +F
Sbjct: 427 KSLLDNKKELVRLFKSDEMEQLGYLKQAKGKKASKVIRSETFWKNVNIAVNYF 479


>04_03_0879 + 20508414-20510051
          Length = 545

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 28/85 (32%), Positives = 40/85 (47%)
 Frame = -1

Query: 370 PSLNSLDPASSTPTPTSLMLCCLRIGAISXNSLAQSLQNMQPQRRKNTIATFCCSQKLFN 191
           P L +   ASS PT  SL    +R+G  +   +  +L  +Q   R    A    ++ LF+
Sbjct: 110 PLLCACARASSLPTGASLHAAAIRLGVDADLFVRTAL--IQFYGRCGAAAA---ARALFD 164

Query: 190 SKTSPLETFLTFCVPI*XISGDILS 116
           S T+P E   T  V     SGDIL+
Sbjct: 165 SLTNPSEVSWTAIVTAYVNSGDILT 189


>03_02_0153 -
           5961910-5962441,5962779-5963128,5963415-5963681,
           5964149-5964379
          Length = 459

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 264 LWAKELXEIAPILKQHNIKLVGVGVEEAGSKEFSE 368
           +W+K   E+  +L ++  KLVG+ V+  GS E S+
Sbjct: 221 VWSKGYRELLDLLSKYQSKLVGLEVDLYGSGEDSD 255


>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
          Length = 958

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 298 FSSSTTSNLSGLASKRPDPRSSAKESFS 381
           F  S T++ SGL S +PDP SS   + S
Sbjct: 749 FVPSLTADTSGLQSSQPDPNSSLMNNSS 776


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,759,214
Number of Sequences: 37544
Number of extensions: 310818
Number of successful extensions: 754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)