Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_B10
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 81 9e-16
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 66 3e-11
12_02_0911 + 24236374-24237582 36 0.043
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 31 0.94
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 3.8
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 5.0
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 29 6.6
06_03_0355 + 19822110-19824491 28 8.7
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 81.4 bits (192), Expect = 9e-16
Identities = 58/168 (34%), Positives = 84/168 (50%), Gaps = 3/168 (1%)
Frame = +3
Query: 360 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 539
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 540 RG---KLTGSVTNLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDY 710
RG +L VT L + P A+E AL LE V + + + S ND
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK---GDALYAMELALALEKLVNEKLHN-LHSVASRCNDP 206
Query: 711 HLVDYLSGEFLDEQYKGXRDLAGKASTLXKMMDXHAALGEFIFDXKLL 854
L D++ EFL+EQ + + ++ + L ++ H G + FD KLL
Sbjct: 207 QLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH---GVWHFDQKLL 251
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 66.5 bits (155), Expect = 3e-11
Identities = 55/157 (35%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
Frame = +3
Query: 393 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 563
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 564 TNLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFL 743
T L + P E G AL L + V C ND L D++ EFL
Sbjct: 194 TPLTEFDHP-----EKG-DALYGELLSACPIYVFYSMVASRC----NDPQLTDFVESEFL 243
Query: 744 DEQYKGXRDLAGKASTLXKMMDXHAALGEFIFDXKLL 854
+EQ + + ++ + L ++ H G + FD KLL
Sbjct: 244 EEQVEAIKKISEYVAQLRRVGKGH---GVWHFDQKLL 277
>12_02_0911 + 24236374-24237582
Length = 402
Score = 35.9 bits (79), Expect = 0.043
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +3
Query: 549 LTGSVTNLITYRAPANTSW--ESGASALEHA--LKLESDVTNSIREVIKTCESSFNDYHL 716
L VTNL+ R A ++GA+A + A L+L+ S +EV +H+
Sbjct: 148 LPSKVTNLLLLRLKARNQQVVDAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHV 207
Query: 717 VDYLSGEFLDEQYKGXRDL 773
D+LS +EQY G L
Sbjct: 208 DDFLSDACSNEQYSGDSSL 226
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 31.5 bits (68), Expect = 0.94
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 542 GQADRLRNQPHHVQGPRQHVVGERRISPRARPQAGE*R-HQQHPGGHQDLREQ 697
G + + +QP ++Q P QH P+ +PQ + HQQ P HQ +++Q
Sbjct: 502 GNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQP-QHQQMQQQ 553
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 612 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 719
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 420 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 536
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3
Query: 341 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDIQKN 192
P+I G+ D + C D KE PH RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177
>06_03_0355 + 19822110-19824491
Length = 793
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +3
Query: 468 AKLFFDAATEEREHATKLIDYLL-MRGKLTGSVTNLITYRAPANTSWESGASALEHALKL 644
A +F++ E + YL M + + +L + R W++ EH L +
Sbjct: 487 ASMFYEQKERELQDVLVEKQYLANMLQEKEQIIQSLNSARFEQENKWQAELRRFEHDLNV 546
Query: 645 ESDVTNSIREVIKTCESSFNDY 710
+ + R +K +SF++Y
Sbjct: 547 MAQLVTGYRRALKQNRASFDEY 568
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,844,308
Number of Sequences: 37544
Number of extensions: 413762
Number of successful extensions: 1054
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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