Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_B09
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    29   1.1  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    28   1.4  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    28   1.9  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    27   4.3  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    27   4.3  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   4.3  

>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 128 SGVDIAETTQNPPPYNNQMQTDLYHVVPTVPTQQFITVQAPQ 253
           SG+D  E TQ  PP ++   + +    P  P+++     +P+
Sbjct: 148 SGIDDIELTQRTPPSSSHTSSSILQNTPVTPSRKIFHYLSPR 189


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 257 GPKPARYTCPSCKASITTRVEYVSATKTH 343
           G KP   + PSCK   T R E +   +TH
Sbjct: 28  GEKPFECSYPSCKKRFTRRDELIRHVRTH 56


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -3

Query: 222 VGTVGTT*YKSVCIWLLYGGGF*VVSAMSTPDKSA*CCTRGIFILFYHT 76
           V T G+    SVC++L Y GGF V    +T        T  IFIL++ T
Sbjct: 327 VKTFGSLLTCSVCLFLTYVGGFSVHMMKTTMLIGLTATTLIIFILYFAT 375


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 158 NPPPYNNQMQTDLYHVVPTVPTQQFITVQAPQMGPKPARYTCP 286
           N PP   Q Q    H     P++  ++ +  ++  K A+Y+ P
Sbjct: 150 NQPPQQQQQQQQQQHQQHATPSEPVLSKRQQKLRKKAAKYSRP 192


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 157 LSSFCYVYARQIGLMLHQRHFHFILP 80
           L S   ++AR +  +LHQRHF+ + P
Sbjct: 452 LPSHGNLFARLVSHVLHQRHFYPLFP 477


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 170 YNNQMQTDLYHVVPTVPTQQFITVQAPQM 256
           YN  +  + +HVVP++P  +FI +    M
Sbjct: 838 YNEPIHQNAFHVVPSMPFVKFIRLDENSM 866


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,219
Number of Sequences: 5004
Number of extensions: 61212
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)