Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_B09
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    31   1.1  
08_01_0545 - 4740883-4740902,4741169-4741286                           29   4.5  
03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216           29   6.0  
03_01_0063 + 502441-502657,502765-503027,503115-503528                 29   6.0  
02_03_0036 + 14186407-14186566,14188241-14188548                       29   6.0  

>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 158 NPPPYNNQMQTDLYHVVPTVPTQQFI-TVQAPQMGPKPARYTCPSCKASITTRVEY 322
           N PPY   M   +Y+ +P VP +      +  Q  P P     P  +A I T+VEY
Sbjct: 284 NGPPYPGPMPP-MYYYMPAVPMEPMRGPPRFVQNQPPPHPVLSPELRAKILTQVEY 338


>08_01_0545 - 4740883-4740902,4741169-4741286
          Length = 45

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -2

Query: 463 APDIRAAVRTVVCGVSAAFAAVRNASTGP 377
           AP++ AAV   VC VSAA AA   AS  P
Sbjct: 7   APEMGAAVVAGVCVVSAAVAAAAAASPSP 35


>03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216
          Length = 750

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 168 HTITRCKQIYIMSFPLYRLNSSSQFKRRKWAL 263
           H  TRC  I ++   +   +++SQF+   WAL
Sbjct: 123 HEFTRCSNIVVLGLYVLYYSNASQFRYPLWAL 154


>03_01_0063 + 502441-502657,502765-503027,503115-503528
          Length = 297

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -2

Query: 349 TQVGFRRRYIFYSGR--DGRFAAWAGIACRLRAHLRRLNCD-ELLSRYSGNDMI 197
           T  G R+  +FYSGR  +GR  AW     RL  H    N + + + +  G+D +
Sbjct: 120 TVAGARKTLVFYSGRAPNGRKTAWVMHEFRLLHHHHHPNPNIQNMQQQEGDDWV 173


>02_03_0036 + 14186407-14186566,14188241-14188548
          Length = 155

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 167 PYNNQMQTDLYHVVPTV--PTQQFITVQAPQMGPKPA 271
           P   ++  D +H  P V  PTQ+   +QAP + P+ A
Sbjct: 84  PPQGELGMDYWHAAPQVTQPTQEMGAIQAPNVTPQQA 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,877,880
Number of Sequences: 37544
Number of extensions: 395166
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)