Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_B09
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.16 
SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.65 
SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_10716| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)                 29   4.6  
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)             29   6.1  
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.1  
SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 409  KLPKRHTLLSELQRVYRELH-RLINLIFVRLRLFVAAYMAFCILTNHCG*KLRRVGI 576
            +LP R    SEL R     H R +N+    LRLF   + A  IL++HC  +L+R  I
Sbjct: 923  RLPARGIKRSELVRAVNSSHVRRVNIR--HLRLFDVYFFAAAILSSHCATRLKRRNI 977


>SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
 Frame = -2

Query: 520 CRLPRTIVNVQKLS*LTDVAPDIRAAVRTVVCGVSAAFAAVRNASTGPAT*TAKE*STQV 341
           C L +T +N  +L   T V  D R+ +R ++C   A                A   S  V
Sbjct: 434 CDLTKTCLNPDELHTTTFVV-DRRSGIRRLICTRVAKVLRADRLEVPVTESLACVASVSV 492

Query: 340 GFRRRYIFYSG---RDGRFAAWAGIACRLRAHLRRLNCDELLSRYSG 209
            F R+  + +    R+ R+A W    C  R  +R ++  +L S+Y+G
Sbjct: 493 CFERKENYRNRGNRREVRYAFWPLEKCGERKMVRAISLTDLRSKYTG 539


>SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +1

Query: 124 FVWRRHSRNYSKPAAIQ*PDANRFISCRSHCTDSTVHHSSSAANGP*ACTLYLPKLQSVH 303
           F+++R SR Y K   I  PD   F+ C S    +  H  S+  +G  + T       S  
Sbjct: 30  FLFKRASRGYQKELIIDDPDTFLFLICPSSIPRADSH--STMDDGTPSITHRSRHALSHS 87

Query: 304 HDQSR-ICIGDENPPVCFT 357
           H  +R + + D  PP C T
Sbjct: 88  HTTARTVTLADHGPP-CHT 105


>SB_10716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +2

Query: 227 QFITVQAPQMGPKPARYTCPSCKASITTR 313
           QFI  Q  QM  K  R TCP  KA + TR
Sbjct: 9   QFILDQVLQMTVKKRRITCPPMKAPLLTR 37


>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
          Length = 300

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 451 VYRELHRLINLIFVRLRLFVAAYMAFCI 534
           VYR   RLI L+ +   LF   +MA C+
Sbjct: 206 VYRSRKRLIKLLILMTTLFFTCWMALCV 233


>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +2

Query: 86   NKMKMPLVQHQADLSGVDIAETTQNPPPYNNQMQTDLYHVVPTVPTQQFITVQAPQMGPK 265
            N++ MP        + V+I +T   PP + ++++  L HV  TVP  + +   +  + P+
Sbjct: 1159 NQILMPDEHDTGKFNVVNITKTINKPPSFKDKLKIIL-HVTSTVPDGRAVVFTSDNVPPE 1217


>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
          Length = 667

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 134 VDIAETTQNPPPYNNQMQTDLYHVVPTVPTQQFITVQAPQMGPKP--ARYTCPS-CKAS 301
           +DI + TQ+PPP +  +Q+ +     T P +   TV +P   P P   RY+  S C  S
Sbjct: 254 IDIPDGTQSPPPSSPFLQSPM-----TSPRRATFTVGSPSSPPTPRTRRYSSGSRCSPS 307


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 140 IAETTQNPPPYNNQMQTDLYHVVPTVPTQQFITVQAPQM 256
           +A TT  PPP N    +  + +  T P     T   P+M
Sbjct: 684 LAPTTHKPPPSNQHNSSSSHRISSTTPNTACTTSNLPRM 722


>SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 185 QTDLYHVVPTVPTQQFITVQAPQMGPKPARYTCPSCKAS-ITTRVEYV 325
           +T + H++  +P Q    +  PQ G   A Y C + + +  T R +Y+
Sbjct: 339 ETLIDHMITNLPKQYCDVLPCPQKGDHDAPYVCMNIRVTRFTPRYKYI 386


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,799,246
Number of Sequences: 59808
Number of extensions: 477870
Number of successful extensions: 1067
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)