Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_B09
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   2.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   8.0  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 653 SNQDNNNYDVNSINFMNAQY 594
           +N +NNNY+ N  N+ N  Y
Sbjct: 327 NNYNNNNYNNNYNNYNNNNY 346


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 339 PTCVLYSFAVYVAGPVLAFLTAAKAAETPHTTVRTAAR 452
           P+C    + +  A P+LA   AA +++   T++  A R
Sbjct: 99  PSCRRQRYNIAAANPLLAEKLAAPSSQASPTSIPYATR 136


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 136 YARQIGLMLHQRHFHFILP 80
           +   IG+ LH  H+H + P
Sbjct: 199 WREDIGINLHHWHWHLVYP 217


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 113 HQADLSGVDIAETTQNPPPYNNQMQTDLYHV 205
           H  D   VD+   TQ  PP    + T + H+
Sbjct: 283 HHPDPGEVDLPPETQPTPPSATLVGTTITHL 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,143
Number of Sequences: 438
Number of extensions: 4648
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)