Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_B08
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0268 - 42411907-42411986,42412476-42412508,42413276-424133... 151 5e-37
03_05_0042 + 20180151-20180468,20181595-20181665,20182929-201830... 31 0.77
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 29 1.8
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 29 3.1
01_06_1364 + 36684937-36685281 28 4.1
02_01_0057 + 420812-421556,422473-422597,422622-422912,423357-42... 28 5.4
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 27 7.2
10_08_0796 + 20643667-20643912 27 9.5
08_01_1084 - 11120719-11120950,11121035-11121133,11122446-111228... 27 9.5
>01_07_0268 -
42411907-42411986,42412476-42412508,42413276-42413373,
42413499-42413596
Length = 102
Score = 151 bits (365), Expect = 5e-37
Identities = 71/81 (87%), Positives = 76/81 (93%)
Frame = +3
Query: 96 KVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQT 275
KV+FKI LTSDPKLPFKV SVPEA PFTAVLKFAAEEF+V P TSAIIT+DG+GINPQQ+
Sbjct: 16 KVSFKIILTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 75
Query: 276 AGNVFLKHGSELRLIPRDRVG 338
AGNVFLKHGSELRLIPRDRVG
Sbjct: 76 AGNVFLKHGSELRLIPRDRVG 96
>03_05_0042 +
20180151-20180468,20181595-20181665,20182929-20183087,
20183598-20183664,20183913-20184008,20184687-20184733,
20185113-20185193,20185704-20185806,20185967-20186028,
20187188-20187302,20193191-20195087,20195206-20195492
Length = 1100
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 156 VPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQTAG 281
VP P A+ AA VDP++ ++ D IG+ + AG
Sbjct: 230 VPRKKPDPAIYLLAATTLGVDPSSCVVVEDSTIGLAAAKAAG 271
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 29.5 bits (63), Expect = 1.8
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = -2
Query: 233 STGGRVHPEFFSCKLQHCSEWS-RFRHAKYFKRQFRIR-CECNLESYFRHFKLYTKLKNL 60
S G V PEF S L+ C E S F + F +R C C + S + K + L L
Sbjct: 1362 SAEGFVVPEFLS--LESCKEPSVSFEESANFTSVKCLRLCNCEMRSPPGNMKCLSSLTKL 1419
Query: 59 CSISFPNLLQITKLKSS 9
PN+ I L SS
Sbjct: 1420 DIYDCPNISSIPDLPSS 1436
>07_03_0471 +
18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 252 IGINPQQTAGNVFLKHGSELRLIPRDRV 335
IG+N ++ A VF K +ELRL+P D +
Sbjct: 378 IGLNKKRIAYFVFPKEDNELRLVPGDEL 405
>01_06_1364 + 36684937-36685281
Length = 114
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 213 VDPATSAIITDDGIGINPQQTAGNVFLKHGSELRL 317
+DP T I DDG + +QT V L+ GS + L
Sbjct: 67 LDPKTVKFIDDDGRFVRSEQTPEEVGLQDGSTISL 101
>02_01_0057 +
420812-421556,422473-422597,422622-422912,423357-423555,
423737-423800,423894-423957,424055-424135,424334-424420,
424492-424500
Length = 554
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 215 HPEFFSCKLQHCSEWSRFRHAKYFKRQF 132
+ + SC+L H +EW + H F RQ+
Sbjct: 151 YASWISCELPHRTEWPQVLHGNNFLRQW 178
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 222 ATSAIITDDGIGINPQQTAGNVFLKHGSELRLIPRDRVGFSLI*VHKYVK 371
AT+ + DD +N + +G V G L + +DRV + KY+K
Sbjct: 1939 ATNMLARDDSTEVNSNKDSGYVLKDSGYVLNFVQKDRVLAAAADEVKYMK 1988
>10_08_0796 + 20643667-20643912
Length = 81
Score = 27.1 bits (57), Expect = 9.5
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +3
Query: 90 MSKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQ 269
MS +T K+ + ++ + EAT A +K E P + G +
Sbjct: 1 MSMITVKVKTLTGKEVEVSI----EATETVARIKEQVEAAEGIPPPQQTLIYGGRQLADD 56
Query: 270 QTAGNVFLKHGSELRLI 320
TA L+HGSEL L+
Sbjct: 57 MTAEMCDLRHGSELHLV 73
>08_01_1084 -
11120719-11120950,11121035-11121133,11122446-11122849,
11123559-11124197
Length = 457
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 87 KMSKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATS 230
K S+++ I +S K P K P ATP VL+ + + P+TS
Sbjct: 33 KASELSAAIQSSSSSKRPKKQPPPPRATPIPVVLRRSLRTRGLPPSTS 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,936,221
Number of Sequences: 37544
Number of extensions: 209579
Number of successful extensions: 620
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -