Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_B08
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51991| Best HMM Match : UPF0185 (HMM E-Value=3.3e-14)               76   2e-14
SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_53293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  

>SB_51991| Best HMM Match : UPF0185 (HMM E-Value=3.3e-14)
          Length = 334

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 36/41 (87%), Positives = 38/41 (92%)
 Frame = +3

Query: 84  FKMSKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEE 206
           F  SKVTFKITLTSDPKLP+KVLSVPE TPFTAVL+FAAEE
Sbjct: 16  FYRSKVTFKITLTSDPKLPYKVLSVPENTPFTAVLRFAAEE 56


>SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 13  DFSFVI--CNKLGNEIEHKFFNFVYSLKCRK*LSRLHSH 123
           DFS V+  C+KL  E  ++FF   Y  KC   LS+ + +
Sbjct: 200 DFSKVVKLCSKLAKESGYRFFGIAYYTKCVVDLSKNYDY 238


>SB_53293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -3

Query: 289 NTLPAVC*GFMPIPSSVIIALVAGSTLNSSAANFNTAVNGVASGTLSTLNGSFGS 125
           +TL   C   +  PS + +  + G  L++S+  F+ A   V+S     LNG+FGS
Sbjct: 71  HTLQKAC--TIKFPSDMKMLAMLGGELSNSSRYFS-AFGNVSSHDCGDLNGTFGS 122


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = +3

Query: 153  SVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQTAGNVFLKHGSELRLIPR 326
            S+ +A     VL    E+F V+  TSA+++++  G    ++ GN F K GS  R IP+
Sbjct: 1047 SIKQANNIKNVL--TKEDFLVNE-TSAVLSENFPGSESNKSIGNAFTKKGS-TRDIPK 1100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,981,963
Number of Sequences: 59808
Number of extensions: 253427
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)