Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_B08
(534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14429-8|AAA28214.1| 94|Caenorhabditis elegans Hypothetical pr... 153 6e-38
AF303260-1|AAG50218.1| 94|Caenorhabditis elegans 3H949 protein. 153 6e-38
U41508-3|AAN39664.1| 317|Caenorhabditis elegans Set (trithorax/... 30 1.2
AL132948-18|CAD31819.1| 390|Caenorhabditis elegans Hypothetical... 29 2.1
AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical ... 29 2.8
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 28 3.7
Z82092-3|CAB05013.1| 638|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z70311-10|CAA94377.3| 602|Caenorhabditis elegans Hypothetical p... 27 6.4
AL021471-3|CAA16297.1| 638|Caenorhabditis elegans Hypothetical ... 27 6.4
>L14429-8|AAA28214.1| 94|Caenorhabditis elegans Hypothetical
protein ZK652.3 protein.
Length = 94
Score = 153 bits (372), Expect = 6e-38
Identities = 72/82 (87%), Positives = 78/82 (95%)
Frame = +3
Query: 93 SKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQ 272
SKVTFKITLTSDPKLPFKVLSVPE+TPFTAVLKFAAEEF+V ATSAIIT+DG+G+NP Q
Sbjct: 12 SKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQ 71
Query: 273 TAGNVFLKHGSELRLIPRDRVG 338
AGN+FLKHGSELRLIPRDRVG
Sbjct: 72 PAGNIFLKHGSELRLIPRDRVG 93
>AF303260-1|AAG50218.1| 94|Caenorhabditis elegans 3H949 protein.
Length = 94
Score = 153 bits (372), Expect = 6e-38
Identities = 72/82 (87%), Positives = 78/82 (95%)
Frame = +3
Query: 93 SKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQ 272
SKVTFKITLTSDPKLPFKVLSVPE+TPFTAVLKFAAEEF+V ATSAIIT+DG+G+NP Q
Sbjct: 12 SKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQ 71
Query: 273 TAGNVFLKHGSELRLIPRDRVG 338
AGN+FLKHGSELRLIPRDRVG
Sbjct: 72 PAGNIFLKHGSELRLIPRDRVG 93
>U41508-3|AAN39664.1| 317|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 20,
isoform a protein.
Length = 317
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 146 FKRQFRIRCECNLESYFRHFKLYTKLKNLCSISFP 42
++ Q R+ E E ++FK K + C+ISFP
Sbjct: 49 YRMQLRVNAEIEQEEEVQNFKKCCKCRGKCAISFP 83
>AL132948-18|CAD31819.1| 390|Caenorhabditis elegans Hypothetical
protein Y39B6A.22 protein.
Length = 390
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 231 AIITDDGIGINPQQTAGNVFLKHGSELRLIPRDRVGFSL 347
A+ TD G P GNVFL+ + + R+GF++
Sbjct: 347 AMFTDSSTGFGPSFGFGNVFLRQYCNIFDVGNARIGFAI 385
>AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical
protein Y59A8B.6 protein.
Length = 968
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 262 FMPIPSSVIIALVAGSTLNSSAANFNTAVNGVASGTLSTLNGSFGS 125
F P+P S+I + ++ S + N ASG +STL G G+
Sbjct: 192 FTPVPDSIIAMNMNYGQMSHSIDSGNGLTTPFASGFMSTLGGGGGA 237
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 90 MSKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEF 209
++K T K+ L++ P+ VL P FT ++KF EEF
Sbjct: 132 ITKKTTKLHLSASPQTGHAVLPYP----FTGIIKFQTEEF 167
>Z82092-3|CAB05013.1| 638|Caenorhabditis elegans Hypothetical
protein ZK384.3 protein.
Length = 638
Score = 27.5 bits (58), Expect = 6.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 114 TLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITD--DGIGINPQQTAGNV 287
T+ S P L F + + E P +A E+ +D T A+ D G P T GN+
Sbjct: 309 TMNSLPDLVFTIGA--EKFPISA--PEYVEDVGLDDGTCALAMYGIDASGFGPSVTLGNI 364
Query: 288 FLKHGSELRLIPRDRVGFS 344
F++ + + R+GF+
Sbjct: 365 FIRRYCSVFDVGNARIGFA 383
>Z70311-10|CAA94377.3| 602|Caenorhabditis elegans Hypothetical
protein T25B9.6 protein.
Length = 602
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 102 LLSTF*TIHKIKKFMFNFVSQFITNYKT 19
+L TF T ++I+KF+ N S +ITN T
Sbjct: 217 ILKTFRTKYRIEKFVRNTESVYITNNNT 244
>AL021471-3|CAA16297.1| 638|Caenorhabditis elegans Hypothetical
protein ZK384.3 protein.
Length = 638
Score = 27.5 bits (58), Expect = 6.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 114 TLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITD--DGIGINPQQTAGNV 287
T+ S P L F + + E P +A E+ +D T A+ D G P T GN+
Sbjct: 309 TMNSLPDLVFTIGA--EKFPISA--PEYVEDVGLDDGTCALAMYGIDASGFGPSVTLGNI 364
Query: 288 FLKHGSELRLIPRDRVGFS 344
F++ + + R+GF+
Sbjct: 365 FIRRYCSVFDVGNARIGFA 383
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,989,434
Number of Sequences: 27780
Number of extensions: 202684
Number of successful extensions: 461
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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