Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_B06
(716 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 194 8e-50
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 60 1e-09
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 56 4e-08
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 37 0.019
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 36 0.043
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 34 0.10
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 28 6.6
SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095) 28 8.7
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 194 bits (472), Expect = 8e-50
Identities = 101/168 (60%), Positives = 124/168 (73%), Gaps = 4/168 (2%)
Frame = +3
Query: 180 SLHKSYQLSRFY--AKDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPK 353
SL + + SRF K+++FGA+ RA MLQGVD LADAVAVT+GPKG+NVI+EQS+G PK
Sbjct: 45 SLGEGFSTSRFQNSPKELKFGAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPK 104
Query: 354 ITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 533
ITKDGVTVAK +ELKDK+QNIGA+LVQ+VANNTNEEAGDGTTTATVLAR+IA EGF +S
Sbjct: 105 ITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVS 164
Query: 534 KGANPIEIRR-GVMLAVDAVKEKLKGMSKP-VTTPEEIAQVATISANG 671
KGANP E+ + DA M + + P ++ + A A G
Sbjct: 165 KGANPQEVSSLENAMGYDAANNTYVDMIQAGIIDPTKVVRTAITDAAG 212
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 60.5 bits (140), Expect = 1e-09
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Frame = +3
Query: 264 GVDILADAVAVTMGPKGRNVILEQSW--GSPKITKDGVTVAKGVELKDKFQNIGAKLVQN 437
G + D V T+GPKG + IL+ G+ ++T DG T+ K + + N AK++
Sbjct: 28 GAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILKSIGI----DNPAAKILVE 83
Query: 438 VANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLK 605
++ ++E GDGTT+ TVL + KE + +S +P I G +V A ++ L+
Sbjct: 84 LSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 139
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 55.6 bits (128), Expect = 4e-08
Identities = 32/113 (28%), Positives = 57/113 (50%)
Frame = +3
Query: 276 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTN 455
+A + ++GPKG + ++ G +T DG T+ +E+ + AKL+ ++ + +
Sbjct: 42 VASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQI----AKLMVELSKSQD 97
Query: 456 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLKGMS 614
E GDGTT VLA A+ + + + G +PI I G LA E + ++
Sbjct: 98 NEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDSIA 150
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 36.7 bits (81), Expect = 0.019
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 219 KDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTV 377
KD ++R + +ADA+ ++GPKG + +++ G IT DG T+
Sbjct: 17 KDKEKPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 36.3 bits (80), Expect = 0.025
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +3
Query: 354 ITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 533
+T DG + + +++K AK + ++ +EE GDGTT+ +LA +
Sbjct: 1 MTNDGNAILREIQVKHP----AAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLE 56
Query: 534 KGANPIEIRRGVMLAVDAVKEKLK 605
+ +P +I LA+D + + LK
Sbjct: 57 QQMHPTQIIAAYRLAMDDMIDILK 80
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 35.5 bits (78), Expect = 0.043
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +3
Query: 453 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLK 605
++E GDGTT+ TVLA + KE + +S +P I G +V A ++ L+
Sbjct: 7 DDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 57
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +3
Query: 258 LQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQN 437
+ +ADAV T+GP+G + ++ G I+ DG T+ + L D + AK + +
Sbjct: 661 IDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATI---INLLD-IVHPAAKTLVD 716
Query: 438 VANNTNEE 461
+A + + E
Sbjct: 717 IAKSQDAE 724
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 33.1 bits (72), Expect = 0.23
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 396 KDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 575
K + ++ AK + ++ +EE GDGTT+ +LA + + +P +I L
Sbjct: 208 KIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267
Query: 576 AVDAVKEKLK 605
A+D + + LK
Sbjct: 268 AMDDMIDILK 277
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 32.7 bits (71), Expect = 0.31
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +3
Query: 384 GVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRR 563
GV+ + Q+ A L+ VA ++ GDGTT+ ++ + K+ +S+G +P +
Sbjct: 165 GVQ-NSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTE 223
Query: 564 GVMLAVDAVKEKLK 605
G +A E L+
Sbjct: 224 GFEVAKKKALEVLE 237
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 489 VLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLKGMSKPVTTPEE 638
V +R + KE EK+SK +P E GV + K + T+PEE
Sbjct: 350 VKSRRVTKEQEEKLSKRPSPGERMGGVAKEQEGNLSKRPSPGESTTSPEE 399
>SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095)
Length = 433
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +1
Query: 295 LQWVQKVETLFWNNLGGP---RRSQKTA*QLPKVLNSRISSRTSVLS*YKT*L--IIPT 456
L WV + ++F+NN GG RS+ +P+ L+ ++S +S+ +K L +PT
Sbjct: 289 LSWVNQSFSVFYNNTGGSDTIPRSRADGWYVPRRLSKKLSYLSSIFLKHKVFLETAVPT 347
>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2021
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 408 QNIGAKLVQNVANNTNEEAG-DGTTTATVLARAIAKEGFEKISKGANPIEIRRG 566
Q + LV N N+ + G DG+T T+ +A+ GF S N + G
Sbjct: 363 QGMNLSLVVNTTTNSVQLTGLDGSTNYTIAVQAVTSRGFGTPSLWVNATTKQEG 416
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,483,864
Number of Sequences: 59808
Number of extensions: 391242
Number of successful extensions: 941
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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