Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_B06
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              25   0.94 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.7  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -1

Query: 716 YLXHCISNELADCRVPVSRYGSYLCDFFGCCNGFRHSFKFLFNG 585
           Y  H + +  AD RV      +Y C   G C    H+ K+   G
Sbjct: 53  YRKHLLKD--ADGRVSCPVLRAYTCPICGACGDIAHTVKYCPKG 94


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 650 YLCDFFGCCNGFRHS 606
           ++  FFGCC   R S
Sbjct: 63  FVISFFGCCGAIRES 77


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 388 TPLATVTPSFVIFGDPQ 338
           +P A + P  V++G+PQ
Sbjct: 98  SPSAALQPQHVVYGNPQ 114


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -1

Query: 650 YLCDFFGCCNGFRHSFKFLFNGIYGE 573
           Y CD  G   G+ H  K      YGE
Sbjct: 232 YTCDICGKSFGYNHVLKLHQVAHYGE 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,589
Number of Sequences: 438
Number of extensions: 3841
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)