Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_B04
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 40 0.002
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 40 0.002
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 31 0.85
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 31 0.85
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 31 0.85
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical p... 29 2.6
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical pr... 29 3.4
X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin prot... 29 3.4
U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 29 4.5
AF025458-4|AAB70975.4| 374|Caenorhabditis elegans Hypothetical ... 29 4.5
AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical ... 28 6.0
U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical pr... 28 7.9
AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical ... 28 7.9
AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical ... 28 7.9
AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short i... 28 7.9
AB011382-1|BAA24982.1| 357|Caenorhabditis elegans RecA/Rad51/Dm... 28 7.9
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 39.9 bits (89), Expect = 0.002
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 8/183 (4%)
Frame = +1
Query: 211 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 390
EG+ + + + +D +L++Y R +R QA+RK++
Sbjct: 46 EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105
Query: 391 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 570
EEK+++ EE KK Q M+ + G NF IQKK
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164
Query: 571 ENFGLSN-------AQLERNKTKEQLEXEXKISLS-IRIKPLTIEGLSVDKLRQKAXELW 726
E+ G+ + A+ E TKEQ E ++++ IR + + ++ K EL
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMAGIRKSIAEASTILPNDMKAKIKELH 224
Query: 727 ECI 735
+ I
Sbjct: 225 QRI 227
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 39.9 bits (89), Expect = 0.002
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 8/183 (4%)
Frame = +1
Query: 211 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 390
EG+ + + + +D +L++Y R +R QA+RK++
Sbjct: 46 EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105
Query: 391 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 570
EEK+++ EE KK Q M+ + G NF IQKK
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164
Query: 571 ENFGLSN-------AQLERNKTKEQLEXEXKISLS-IRIKPLTIEGLSVDKLRQKAXELW 726
E+ G+ + A+ E TKEQ E ++++ IR + + ++ K EL
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMAGIRKSIAEASTILPNDMKAKIKELH 224
Query: 727 ECI 735
+ I
Sbjct: 225 QRI 227
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 31.1 bits (67), Expect = 0.85
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQ-KKSENFGLSNAQLERNKTKEQLEX 633
IE+ Q+LEEAEK+ + + +AS + + T+ K+SE L E N E+L+
Sbjct: 648 IEDAVQKLEEAEKRAREL-----EASVSSRDTTVSTKESELSELKGKLTESNSFIEELKV 702
Query: 634 E-XKISLSIRIKPLTIEGLSVDKLRQK 711
+ K+S I K +E L + +R K
Sbjct: 703 QVEKVSNEISEKQQEVENLMAE-MRDK 728
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 31.1 bits (67), Expect = 0.85
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQ-KKSENFGLSNAQLERNKTKEQLEX 633
IE+ Q+LEEAEK+ + + +AS + + T+ K+SE L E N E+L+
Sbjct: 650 IEDAVQKLEEAEKRAREL-----EASVSSRDTTVSTKESELSELKGKLTESNSFIEELKV 704
Query: 634 E-XKISLSIRIKPLTIEGLSVDKLRQK 711
+ K+S I K +E L + +R K
Sbjct: 705 QVEKVSNEISEKQQEVENLMAE-MRDK 730
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 31.1 bits (67), Expect = 0.85
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQ-KKSENFGLSNAQLERNKTKEQLEX 633
IE+ Q+LEEAEK+ + + +AS + + T+ K+SE L E N E+L+
Sbjct: 650 IEDAVQKLEEAEKRAREL-----EASVSSRDTTVSTKESELSELKGKLTESNSFIEELKV 704
Query: 634 E-XKISLSIRIKPLTIEGLSVDKLRQK 711
+ K+S I K +E L + +R K
Sbjct: 705 QVEKVSNEISEKQQEVENLMAE-MRDK 730
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/82 (25%), Positives = 40/82 (48%)
Frame = +1
Query: 463 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXEXK 642
E+R++LEE+E RQA L +++ E L +LE K + + + +
Sbjct: 337 ERRRKLEESETARQAELDRQATIYAEQERMAMERNRE---LERIRLEEKKRENERVRQEE 393
Query: 643 ISLSIRIKPLTIEGLSVDKLRQ 708
I++ I K +E L +++ R+
Sbjct: 394 IAMEIS-KIRELERLQLERQRK 414
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
F35G12.8 protein.
Length = 1549
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXE 636
+E+K++ +EE EKKR + + A IQ K + Q R++ KE L+
Sbjct: 869 LEDKQKIVEELEKKRDEL--GEEAAKVKARQAEIQSKLDGIFKELVQCHRDEAKESLQKR 926
Query: 637 XKISLSI 657
K+ I
Sbjct: 927 QKLEKDI 933
>Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical
protein C54D10.12 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +1
Query: 460 EEKRQRLEEAEKKRQAMLQAMKDAS------KTGPNFTIQKKSENFGLSNAQLERNKTKE 621
EEK Q++ E E+K Q +L K+ + + + I++K E N Q R K E
Sbjct: 208 EEKLQQIREKERKLQELLLRQKEEAEEEALRRLANDSEIEQKLEKIRYENEQQARQKDNE 267
Query: 622 Q 624
Q
Sbjct: 268 Q 268
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/95 (18%), Positives = 43/95 (45%)
Frame = +1
Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEX 633
++E ++++ E E++++ + K+ K QK+ E + E+ + +E
Sbjct: 221 ELEREKEKSREKEREKEREKEREKEREKEREK---QKEREKEREKEREKEKKREEEARRK 277
Query: 634 EXKISLSIRIKPLTIEGLSVDKLRQKAXELWECIV 738
+ + S + I+PL + + + E+W C V
Sbjct: 278 KEEASTPVIIRPLLSQEDDDSNGSESSEEIWICPV 312
>Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL-EX 633
+EE R+RLE+AE++R + + + E+ S+A+ + N ++ +
Sbjct: 239 LEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESIARSDAEHKLNLANTEITQW 298
Query: 634 EXKISLSIRIKPLTIEGLSVDKLRQKAXELWECI 735
+ K + + +E L K+ QK E E I
Sbjct: 299 KSKFDAEVALHHEEVEDLR-KKMLQKQAEYEEQI 331
>Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL-EX 633
+EE R+RLE+AE++R + + + E+ S+A+ + N ++ +
Sbjct: 239 LEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESIARSDAEHKLNLANTEITQW 298
Query: 634 EXKISLSIRIKPLTIEGLSVDKLRQKAXELWECI 735
+ K + + +E L K+ QK E E I
Sbjct: 299 KSKFDAEVALHHEEVEDLR-KKMLQKQAEYEEQI 331
>X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin
protein.
Length = 882
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 457 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL-EX 633
+EE R+RLE+AE++R + + + E+ S+A+ + N ++ +
Sbjct: 255 LEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESIARSDAEHKLNLANTEITQW 314
Query: 634 EXKISLSIRIKPLTIEGLSVDKLRQKAXELWECI 735
+ K + + +E L K+ QK E E I
Sbjct: 315 KSKFDAEVALHHEEVEDLR-KKMLQKQAEYEEQI 347
>U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical
protein F27C1.6 protein.
Length = 647
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 454 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLER 606
D E+ ++ ++E EK + L S GP T +K+ +NF + + R
Sbjct: 514 DFEDMKEGVKEKEKVKDVDLNLAGWGSWVGPGMTEKKRRQNFVIKAKEKRR 564
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/54 (22%), Positives = 31/54 (57%)
Frame = +1
Query: 460 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE 621
+EK+Q+L+E EK+R+ + Q ++ ++ +E+ +++ ++ K +E
Sbjct: 216 KEKKQKLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDEEDSRKDQRKPRE 269
>AF025458-4|AAB70975.4| 374|Caenorhabditis elegans Hypothetical
protein C01B12.2 protein.
Length = 374
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = +1
Query: 463 EKRQRLEEAEKKRQAMLQAMKDASKTGP----NFTIQKKSENFGLSNAQLERNKTKEQL- 627
E ++R EEAE+K Q A+K +T N TIQ K+ L +E + L
Sbjct: 220 ENQKRQEEAERKLQEKQNAIKCLMETDSVTFWNQTIQSKTSTVVLDRISMELGSLAQNLI 279
Query: 628 -EXEXKISLSIRIKPLTIEGLS 690
+ S S I+ L + GLS
Sbjct: 280 SGRDFAASSSKIIQVLQVLGLS 301
>AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical
protein Y6E2A.8 protein.
Length = 444
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 466 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXEXKI 645
KR+ ++ AEK ++A L+ K++SK+ +KK + + K+ + E K
Sbjct: 323 KRETMKRAEKMKEAELKKKKESSKSKEEDKNKKKEVKIKSAPKTSAKKSAKKSAKKEQKK 382
Query: 646 S 648
S
Sbjct: 383 S 383
>U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical
protein M02B7.5 protein.
Length = 640
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 233 SVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNAL 337
S+K +G N+STNG N+ RR+S N+L
Sbjct: 594 SMKLSNGSNSSAGSSNSSTNGVNNSSFRRLSFNSL 628
>AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical
protein Y43C5A.6b protein.
Length = 357
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 460 EEKRQRLEEAEKKR--QAMLQAM--KDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL 627
+ RQ+ + E++ QA+L A +A + NFT+ K E+ G+S+ + + K
Sbjct: 4 QASRQKKSDQEQRAADQALLNAAIEDNAMEQDENFTVIDKLESSGISSGDISKLKEAGYY 63
Query: 628 EXEXKISLSIRIKPLTIEGLSVDK 699
E ++ + R + ++G+S K
Sbjct: 64 TYE-SLAFTTRRELRNVKGISDQK 86
>AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical
protein Y43C5A.6a protein.
Length = 395
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 460 EEKRQRLEEAEKKR--QAMLQAM--KDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL 627
+ RQ+ + E++ QA+L A +A + NFT+ K E+ G+S+ + + K
Sbjct: 42 QASRQKKSDQEQRAADQALLNAAIEDNAMEQDENFTVIDKLESSGISSGDISKLKEAGYY 101
Query: 628 EXEXKISLSIRIKPLTIEGLSVDK 699
E ++ + R + ++G+S K
Sbjct: 102 TYE-SLAFTTRRELRNVKGISDQK 124
>AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short
isoform protein.
Length = 357
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 460 EEKRQRLEEAEKKR--QAMLQAM--KDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL 627
+ RQ+ + E++ QA+L A +A + NFT+ K E+ G+S+ + + K
Sbjct: 4 QASRQKKSDQEQRAADQALLNAAIEDNAMEQDENFTVIDKLESSGISSGDISKLKEAGYY 63
Query: 628 EXEXKISLSIRIKPLTIEGLSVDK 699
E ++ + R + ++G+S K
Sbjct: 64 TYE-SLAFTTRRELRNVKGISDQK 86
>AB011382-1|BAA24982.1| 357|Caenorhabditis elegans
RecA/Rad51/Dmc1-like protein protein.
Length = 357
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 460 EEKRQRLEEAEKKR--QAMLQAM--KDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL 627
+ RQ+ + E++ QA+L A +A + NFT+ K E+ G+S+ + + K
Sbjct: 4 QASRQKKSDQEQRAADQALLNAAIEDNAMEQDENFTVIDKLESSGISSGDISKLKEAGYY 63
Query: 628 EXEXKISLSIRIKPLTIEGLSVDK 699
E ++ + R + ++G+S K
Sbjct: 64 TYE-SLAFTTRRELRNVKGISDQK 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.131 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,866,672
Number of Sequences: 27780
Number of extensions: 176318
Number of successful extensions: 779
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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