Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_B01
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    27   3.1  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    27   4.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   4.1  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   4.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   5.4  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   7.2  

>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = -3

Query: 775 PEIRLQQLLQVIAELHVEVSVEQCLRLARFGRDAVLLHVPEHADCRLPENPGLCVVPGNH 596
           PE   Q +   IA+   ++ VE   +L      +VL      +       P +C++ G+H
Sbjct: 219 PEQLSQGIALAIAKTSTDIVVENAAQLLSQFVFSVLGGHKRLSSRNHNSQPLVCILVGSH 278

Query: 595 SHAYAEVAISHK 560
            HA A VA   +
Sbjct: 279 DHASAAVAAGRR 290


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 724 EVSVEQCLRLARFGRDAVLLHVP 656
           +V   QC+RLARF  D  +  +P
Sbjct: 235 DVKFHQCVRLARFENDRTISFIP 257


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 519 PTTQSLASGRPSTYL*DMAT-SAYACEWFPGTTQRPGFSGSRQSACSGTWSNTASRPNLA 695
           PT+ + +S   ST   + AT S+ A      TT     S S  S  +   SN+A+  +LA
Sbjct: 172 PTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAA---SNSATSSSLA 228

Query: 696 SRRHCSTETSTWSSA 740
           S    ST ++T +S+
Sbjct: 229 SSSLNSTTSATATSS 243


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 358 LHSRPT*Y*EVTGARKLHNVNASTNLAEVGVASRCDGADPHS 483
           LH++   + ++ GA  L   + +  LA+ GVA++ +  + HS
Sbjct: 122 LHNQGVIHRDIKGANILTTKDGTIKLADFGVATKINALEDHS 163


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 20/80 (25%), Positives = 39/80 (48%)
 Frame = +3

Query: 501  LCAALPPTTQSLASGRPSTYL*DMATSAYACEWFPGTTQRPGFSGSRQSACSGTWSNTAS 680
            + A++ PT+ S AS   S+   D +T+A A      +      SGS  S+ +   +  +S
Sbjct: 941  VAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVATASATDSS 1000

Query: 681  RPNLASRRHCSTETSTWSSA 740
              ++A+     + TS+ ++A
Sbjct: 1001 TSSIAAASVTGSSTSSVATA 1020


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +3

Query: 510  ALPPTTQSLASGRPSTYL*DMATSAYACEWFPGTTQRPGFSGSRQSACSGTWSNTASRPN 689
            A P TTQ+ A    +T     AT+  A +  P T      S S  S  S   +N  S+P+
Sbjct: 1033 ARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVSKPS 1092


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 616 CVVPGNHSHAYAEVAISHKYVDGLPDAKL 530
           C+   +HS+ +A V I+  Y  GLP   L
Sbjct: 162 CLTDNSHSNTHAFVRITKAYPHGLPSFHL 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,624
Number of Sequences: 5004
Number of extensions: 61607
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)