Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_B01
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 31 1.4
09_04_0660 - 19286653-19287271,19287791-19287916,19288016-192882... 31 1.4
04_03_0047 + 10118929-10119276 30 2.5
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 29 3.2
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555... 29 3.2
11_06_0611 + 25461469-25461655,25461670-25462238 29 4.3
10_05_0056 + 8635567-8635782,8636275-8637006,8637088-8637531,863... 29 4.3
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 29 4.3
07_03_1641 + 28318256-28318309,28318420-28318458,28318544-283185... 29 4.3
06_01_1115 - 9186521-9187000 29 5.7
08_01_0381 - 3382316-3382459,3382872-3382907,3383323-3383429,338... 28 7.5
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076... 28 9.9
04_01_0557 + 7168446-7168998,7169107-7169141 28 9.9
>12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 541 REGHQHIYEIWLPQHMH-ASGSPERHRDLGFPGADSQRVPGRGAIQ 675
RE HQH +I L A G R+ G P + ++VPG+G+ +
Sbjct: 1126 REHHQHAMDIVLKMKQDVAKGRKNSFRNSGGPKSFKKKVPGKGSFR 1171
>09_04_0660 -
19286653-19287271,19287791-19287916,19288016-19288221,
19288417-19288549,19288632-19288713,19288906-19289035,
19289187-19289279,19289391-19289510,19289594-19289660,
19290079-19290137,19290719-19290943
Length = 619
Score = 30.7 bits (66), Expect = 1.4
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Frame = +1
Query: 487 AAGGSSVPRCHPRL-RAWRRE-------GHQHIYEIWLPQHMHASGSPERHRDLGFPGAD 642
A G + P L R W+R GH H YE P + SPER R G G
Sbjct: 476 AGGAFAEPTARQSLQRLWQRHRVDLAFYGHVHNYERTCPVYDGRCASPERSRYSGAVGGT 535
Query: 643 SQRVPGRGAIQRRAQTSPAED-TVRRRLPHGVLR 741
V G G T+ A +V R + +G ++
Sbjct: 536 IHAVVGGGGSHLSNFTAEAPPWSVYREMDYGFVK 569
>04_03_0047 + 10118929-10119276
Length = 115
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -2
Query: 548 PSRRQALSRGWQRGTELPPAAEL*GSAPSHRLATPTSARLVDAFTL*SLRAPVTS 384
P RR ++ W R LPP A+ PS T++ +V A L S P+ S
Sbjct: 29 PPRRASVPLPWLRSLLLPPLADADPPPPSRESTAITTSVVVAAIFLSSCHQPLPS 83
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/52 (36%), Positives = 21/52 (40%)
Frame = +1
Query: 472 DPHSSAAGGSSVPRCHPRLRAWRREGHQHIYEIWLPQHMHASGSPERHRDLG 627
D H GG R H AW EGH H + QH H +G HR G
Sbjct: 552 DHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQ----QHSHEAGR-NHHRGYG 598
>04_03_0147 -
11853940-11854128,11854933-11855013,11855501-11855584,
11855663-11855735,11855888-11855949,11856246-11856327,
11857643-11858262
Length = 396
Score = 29.5 bits (63), Expect = 3.2
Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Frame = +1
Query: 478 HSSAAGGSSVPRCHPRLRAWRREGHQHIYEIWLPQHMHASGSPERHRDL--GFPG----A 639
+ S AG + R L R G + E W H+H G R R L G P A
Sbjct: 81 NGSIAGDITADR---ELEELARGGARERAERWAAAHLHGGGGDPRDRALADGNPDGRGRA 137
Query: 640 DSQRVPGRGAIQRRAQTSPAEDTVRRRLPHGV 735
P RG RR + SP+ D RR HGV
Sbjct: 138 GGSPEPARG--PRRQRGSPSPD--RRHGHHGV 165
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/72 (27%), Positives = 28/72 (38%)
Frame = +1
Query: 466 GADPHSSAAGGSSVPRCHPRLRAWRREGHQHIYEIWLPQHMHASGSPERHRDLGFPGADS 645
G ++A G P L+ WRREG I+ + P+ P R L G+D
Sbjct: 133 GEGATAAAVGPPPPPFPQSGLQIWRREGAPTIHAVAPPRRPPPPRLPSRASPLAPAGSDG 192
Query: 646 QRVPGRGAIQRR 681
P +RR
Sbjct: 193 MAPPPLPGRRRR 204
>10_05_0056 +
8635567-8635782,8636275-8637006,8637088-8637531,
8637618-8637665,8637706-8638505,8638584-8638754,
8638837-8639125,8639211-8639249,8639355-8639393
Length = 925
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 680 RRCIAPRPGTR*LSAPGKPRSLCRSGEPLA 591
RR P P LS PG+P+++ + GEP++
Sbjct: 53 RRRPPPSPAPPPLSPPGRPQTMSQRGEPMS 82
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -2
Query: 761 AAVASGYRRTPCGSLRRTVSSAGEVWARRCIAPRPGT 651
AA A G P S+ R+V GEV RC+ RP T
Sbjct: 94 AAAAGGAVPAPSVSISRSVPHKGEVNRARCMPQRPYT 130
>07_03_1641 +
28318256-28318309,28318420-28318458,28318544-28318597,
28318653-28318780,28318993-28319044,28319211-28319309
Length = 141
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 665 EQYSVAPKPRQPKTLFDGDFHME 733
E + AP+PR+P FD D HME
Sbjct: 112 EDTNQAPQPREPAQEFDTDAHME 134
>06_01_1115 - 9186521-9187000
Length = 159
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 463 DGADPHSSAAGGSSVPRCHPRLRAWR 540
DG D + G +PRC R AWR
Sbjct: 11 DGGDGEETGGGEERLPRCGRRATAWR 36
>08_01_0381 -
3382316-3382459,3382872-3382907,3383323-3383429,
3383518-3383587,3383839-3384663,3384748-3385044,
3385175-3385501,3385760-3386046,3386728-3386896
Length = 753
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +1
Query: 418 NASTNLAEVGVASRCDGADPHSSAAGGSSVPRCHPRLRAWRREGHQHIYEIWLPQHMHAS 597
NA + LAE G D + +SAA SV R +E Q E L HM +
Sbjct: 639 NAGSTLAEGGTCHEDDQKEHDASAANAKSVLRLRKTAEGSDKENKQEEEEGVLASHMLVA 698
Query: 598 GSP 606
P
Sbjct: 699 TYP 701
>11_06_0211 +
21305535-21305895,21306512-21306761,21307543-21307652,
21308836-21309067,21310233-21310603,21311434-21311507,
21311727-21311880,21312251-21312434,21313066-21313291,
21313704-21314135,21314399-21314456,21314748-21314829,
21315350-21315421,21316594-21316737,21317379-21317457,
21318023-21318105,21318198-21318252,21318488-21318778
Length = 1085
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +1
Query: 403 KLHNVNASTNLAEVGVASRCDGADPHSSAAGGSSVPRCHPRLRAWRREGHQHIYEIWLPQ 582
+ H+ A N + + +G+ PHSS + G + +L+ +R E+WL
Sbjct: 541 RCHSPEAFANFFGLLDSVSHNGSKPHSSHSFGYKISDFRYKLK--KRFDRGSYGEVWLAF 598
Query: 583 HMHASGSPERHRD 621
H + S + H+D
Sbjct: 599 HWNCSEDVDVHKD 611
>04_01_0557 + 7168446-7168998,7169107-7169141
Length = 195
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 747 RLSQNSMWKSPSNSVFGWRGLGATLYCST 661
R S N++ +SPS+S FGW L S+
Sbjct: 127 RQSGNALRRSPSSSAFGWSSSSPVLVLSS 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,007,622
Number of Sequences: 37544
Number of extensions: 461630
Number of successful extensions: 1455
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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