Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_B01
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_13769| Best HMM Match : DUF1542 (HMM E-Value=1.1)                   30   1.9  
SB_11452| Best HMM Match : PP-binding (HMM E-Value=7.9)                30   2.5  
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)                  29   3.3  
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_6127| Best HMM Match : Avidin (HMM E-Value=0)                       28   7.6  
SB_2252| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +3

Query: 576 TSAYACEWFPGTTQRPGFSGSRQSACSGTWSNTASRPNLASRRHCSTETSTWSSAIT*SN 755
           TSA    +   +T+    S +  + C+ T SNT++     +  + ST TST + A T SN
Sbjct: 184 TSANTRTYTSTSTRANTISSTCANTCANTRSNTSANTRANTCSNTSTYTSTNTRANTSSN 243

Query: 756 CC 761
            C
Sbjct: 244 TC 245


>SB_13769| Best HMM Match : DUF1542 (HMM E-Value=1.1)
          Length = 369

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = -2

Query: 749 SGYRRTPCGSLRRTVSSAGEVWARRCIAPRPGTR*LSAPGKPRSLCRSGEPLA 591
           +G RR P G   R  S       R  I  R   R   +  +PRS CR+  PLA
Sbjct: 275 TGQRRRPTGRKTRPTSQGRRPTGRTSIEERDAVR--PSGRRPRSTCRNFAPLA 325


>SB_11452| Best HMM Match : PP-binding (HMM E-Value=7.9)
          Length = 221

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 433 LAEVGVASRCDGADPHSSAAGGSSVPRCHPRLRAWRREGHQ--HIYEIW 573
           +A +    RC G  P  +     SVP CHP +    R+G++   +YE+W
Sbjct: 8   IARLAPKPRCKGRVPIPTKR---SVPWCHPEVGEALRQGYRVLAVYEVW 53


>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
          Length = 532

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 230 AVILVFVNGVPISD--VVGIKGCCHYRC 307
           A +L+ VNG  + D  +V  +GCC   C
Sbjct: 225 AAVLIVVNGTGVPDRLIVSFRGCCRVNC 252


>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 610 RHRDLGFPGADSQRVPGRGAIQRRAQTSPAEDTVRRRLPH 729
           R  +L  P +D  RVPGR    R+   S +    R R PH
Sbjct: 420 RREELRQPVSDYPRVPGRSVHDRKRSRSSSPTDDRDRRPH 459


>SB_6127| Best HMM Match : Avidin (HMM E-Value=0)
          Length = 389

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 187 NSNFNVKNALFIKFRGNSSVCEWCTYLRCCG 279
           N N N   A F+ +RG +SV  W      CG
Sbjct: 273 NGNVNSTFAFFVVWRGGASVTGWVGQCHICG 303


>SB_2252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 669 NTASRPNLASRRHCSTETSTWSSA 740
           +T  R NLA+ + C   T+TWS A
Sbjct: 56  STQERENLANAKSCKGPTNTWSQA 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,045,071
Number of Sequences: 59808
Number of extensions: 526457
Number of successful extensions: 1557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)