Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_B01
         (798 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein p...    25   3.6  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   4.7  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   6.3  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   8.3  

>AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein
           protein.
          Length = 357

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 510 ALPPTTQSLASGRPSTYL*DMATSAYACEWFPGTTQRPGFSGSRQSACS 656
           A P  T +LA+G P+T    M     A    P T + PG   +  +A S
Sbjct: 239 ASPVATAALAAGAPATVSTPMDKDDPAAAAAPATAEVPGAVVANPAATS 287


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +1

Query: 31  RVRGCFCAKNISRDSDNFKVFNYHFFQ*Q*LKPYCVVSITITSTQNSMFE 180
           RV+  FC+  ++ ++ NF +      +   +KP  ++S+   +   SM+E
Sbjct: 126 RVQDLFCSVQLNVNNPNFLIMQGRITKVLNMKPAEILSMIEEAAGTSMYE 175


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 509 GTELPPAAEL*GSAPSHRLATP 444
           G ELPP AEL G A    L  P
Sbjct: 660 GVELPPGAELIGYADDLVLLAP 681


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 755 VASGYRRTPCGSLRRTVSSAGEVWARRC 672
           + SG+    CG+ R TV+  G    R C
Sbjct: 644 LCSGHGTCECGTCRCTVTEDGRYTGRYC 671


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 801,081
Number of Sequences: 2352
Number of extensions: 17147
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83992206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)