Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_B01
(798 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK125511-1|BAC86188.1| 559|Homo sapiens rome) (ELN). protein. 33 0.90
AY681966-1|AAV87216.1| 2069|Homo sapiens citron protein. 33 1.6
AY257469-1|AAP13528.1| 2027|Homo sapiens rho/rac-interacting cit... 33 1.6
AC002563-2|AAB71327.1| 1286|Homo sapiens WUGSC:H_127H14.1 protein. 33 1.6
AB023166-1|BAA76793.2| 1559|Homo sapiens KIAA0949 protein protein. 33 1.6
AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein. 31 3.6
AF152338-1|AAD43732.1| 938|Homo sapiens protocadherin gamma C4 ... 31 6.4
AB011181-1|BAA25535.3| 769|Homo sapiens KIAA0609 protein protein. 30 8.4
>AK125511-1|BAC86188.1| 559|Homo sapiens rome) (ELN). protein.
Length = 559
Score = 33.5 bits (73), Expect = 0.90
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 603 PGTTQRPGFSGSRQSACSGTWSNTASRPNLASRRHCSTETSTW 731
PG PG GSR C G+W S + + R+ C S+W
Sbjct: 410 PGVAGVPGVGGSRSRRCPGSWHFPRSSGS-SCRQGCQVRVSSW 451
>AY681966-1|AAV87216.1| 2069|Homo sapiens citron protein.
Length = 2069
Score = 32.7 bits (71), Expect = 1.6
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 544 EGHQHIYEIWLPQHMHASGSPERHRDLGFPGA--DSQRVPGRGAIQRRAQTSPA---EDT 708
EG H E P H + G E RD PG + ++ PGR + R + SP ED+
Sbjct: 1987 EGPSHPREPSTP-HRYREGRTELRRDKS-PGRPLEREKSPGR-MLSTRRERSPGRLFEDS 2043
Query: 709 VRRRLPHGVLR*P 747
R RLP G +R P
Sbjct: 2044 SRGRLPAGAVRTP 2056
>AY257469-1|AAP13528.1| 2027|Homo sapiens rho/rac-interacting citron
kinase protein.
Length = 2027
Score = 32.7 bits (71), Expect = 1.6
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 544 EGHQHIYEIWLPQHMHASGSPERHRDLGFPGA--DSQRVPGRGAIQRRAQTSPA---EDT 708
EG H E P H + G E RD PG + ++ PGR + R + SP ED+
Sbjct: 1945 EGPSHPREPSTP-HRYREGRTELRRDKS-PGRPLEREKSPGR-MLSTRRERSPGRLFEDS 2001
Query: 709 VRRRLPHGVLR*P 747
R RLP G +R P
Sbjct: 2002 SRGRLPAGAVRTP 2014
>AC002563-2|AAB71327.1| 1286|Homo sapiens WUGSC:H_127H14.1 protein.
Length = 1286
Score = 32.7 bits (71), Expect = 1.6
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 544 EGHQHIYEIWLPQHMHASGSPERHRDLGFPGA--DSQRVPGRGAIQRRAQTSPA---EDT 708
EG H E P H + G E RD PG + ++ PGR + R + SP ED+
Sbjct: 1204 EGPSHPREPSTP-HRYREGRTELRRDKS-PGRPLEREKSPGR-MLSTRRERSPGRLFEDS 1260
Query: 709 VRRRLPHGVLR*P 747
R RLP G +R P
Sbjct: 1261 SRGRLPAGAVRTP 1273
>AB023166-1|BAA76793.2| 1559|Homo sapiens KIAA0949 protein protein.
Length = 1559
Score = 32.7 bits (71), Expect = 1.6
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 544 EGHQHIYEIWLPQHMHASGSPERHRDLGFPGA--DSQRVPGRGAIQRRAQTSPA---EDT 708
EG H E P H + G E RD PG + ++ PGR + R + SP ED+
Sbjct: 1477 EGPSHPREPSTP-HRYREGRTELRRDKS-PGRPLEREKSPGR-MLSTRRERSPGRLFEDS 1533
Query: 709 VRRRLPHGVLR*P 747
R RLP G +R P
Sbjct: 1534 SRGRLPAGAVRTP 1546
>AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein.
Length = 1721
Score = 31.5 bits (68), Expect = 3.6
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 11/111 (9%)
Frame = +1
Query: 436 AEVGVASRCDG-ADPH----SSAAGGSSVPRCHPRLRAWRREGHQHIYEIWLPQHMHASG 600
A + S C G PH S GG P HP W +W+ H + G
Sbjct: 40 ARIHPPSSCPGDLAPHLMMQSGQLGGDPAPHTHPH-PPWLPRTRSP--SLWMGGHSYGLG 96
Query: 601 SPERHRDL--GFPGADSQRVPGRGAIQRRAQTS----PAEDTVRRRLPHGV 735
P H++L GFP + + VP + + A T P+E T PH +
Sbjct: 97 HPALHQNLPPGFPASVAGPVPSVFPLPQDAPTQLVILPSEPT-PHSAPHAL 146
>AF152338-1|AAD43732.1| 938|Homo sapiens protocadherin gamma C4
protein.
Length = 938
Score = 30.7 bits (66), Expect = 6.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 549 PSTYL*DMATSAYACEWFPGTTQRPGFSGSRQSACSGTWSN 671
PS L + + +W QRPG SGS+ +GTW N
Sbjct: 806 PSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 846
>AB011181-1|BAA25535.3| 769|Homo sapiens KIAA0609 protein protein.
Length = 769
Score = 30.3 bits (65), Expect = 8.4
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 445 GVASRCDGADPHSSAAGGSSVPRCHP-RLRAWRREGHQHIYEIWLPQHMHASGSPERHRD 621
G A R DP GG++ P C AWR+ + YE + +HA P+R
Sbjct: 1 GSACRDSDPDPLRLVGGGAAAPPCSSVSPSAWRQSRPREYYE--GGRGLHA---PDRETA 55
Query: 622 LGFPGADSQRVPG 660
LG A S+R+ G
Sbjct: 56 LGLGIATSERMLG 68
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,136,230
Number of Sequences: 237096
Number of extensions: 2529701
Number of successful extensions: 6581
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6580
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -