Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_A22
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    47   7e-07
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    46   2e-06
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   1.3  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   2.3  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   4.1  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    24   5.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   5.4  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    23   9.4  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 47.2 bits (107), Expect = 7e-07
 Identities = 21/39 (53%), Positives = 31/39 (79%)
 Frame = +2

Query: 56  LERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRA 172
           ++R+K+ GSLAR A+ +L E+G+I++V QH  Q IYTRA
Sbjct: 46  VDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 45.6 bits (103), Expect = 2e-06
 Identities = 20/38 (52%), Positives = 30/38 (78%)
 Frame = +2

Query: 56  LERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 169
           ++R+K+ GSLAR A+ +L E+G+I++V QH  Q IYTR
Sbjct: 46  VDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTR 83


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 145 MLDYLFDETFFPKLDECSSR 86
           M D LF E+F  +LD C  R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 98  VLFSPGNLG--PLIFQDTTAGVISLYCGTSLSAG 3
           + F  G+ G  P   +D  AG++S Y G S+S G
Sbjct: 507 MFFVSGSSGKMPSSVKDAIAGIVSKYSGCSISDG 540


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 204 IVYATGSSPLVARV*ITCP*CWTTCLMRP 118
           I+Y T ++P++  + +T   CW   L  P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 59  ERLKVRGSLARRALIELREKGLIKQVVQHHGQVIY 163
           ERL +  ++ R AL+EL++  LIKQ      QV++
Sbjct: 186 ERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 62   RLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 187
            R   RG++  R +I  +EK  +++VV   G+   TR TK  D
Sbjct: 1551 RFITRGTIEERIVIRAKEKEEVQKVVISGGE---TRPTKQMD 1589


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 190 WIIALGRTRVDHLPMMLDYLFDETFFPKLDECSSRQGTS 74
           W  +L    +  +P  +DY+  ET   KL+     QGT+
Sbjct: 176 WNFSLDDMAMFDIPDTVDYILRETGREKLNYIGFSQGTA 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 869,207
Number of Sequences: 5004
Number of extensions: 13868
Number of successful extensions: 47
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)