Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_A22
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 50 6e-07
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 49 8e-07
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 40 4e-04
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 29 1.2
03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635 28 2.2
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 27 3.8
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 27 5.0
12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525 26 6.6
05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422 26 6.6
03_05_0350 + 23368111-23368219,23368519-23368526,23368650-233686... 26 6.6
02_02_0060 + 6446317-6446871,6447836-6448276,6449035-6449265,644... 26 6.6
02_02_0058 - 6423776-6423850,6424302-6424379,6426096-6426156,642... 26 8.7
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 49.6 bits (113), Expect = 6e-07
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +2
Query: 59 ERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 175
ERL++ GSLARRA+ +L ++GLI+ V H Q IYTRAT
Sbjct: 68 ERLRINGSLARRAMKDLMDRGLIRMVSVHCSQQIYTRAT 106
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 16 EVPQYKLITPAVVS*KIK 69
EVP+YK ITP+V+S +++
Sbjct: 54 EVPKYKQITPSVLSERLR 71
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 49.2 bits (112), Expect = 8e-07
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +2
Query: 59 ERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 175
ERL++ GSLARRA+ +L +GLI+ V H Q IYTRAT
Sbjct: 68 ERLRINGSLARRAINDLMTRGLIRMVSVHSSQQIYTRAT 106
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 16 EVPQYKLITPAVVS*KIK 69
EVP+YK ITP+V+S +++
Sbjct: 54 EVPKYKQITPSVLSERLR 71
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 40.3 bits (90), Expect = 4e-04
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +2
Query: 71 VRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 175
+ GSLAR+A+ +L +G I+ V H Q+IYTRAT
Sbjct: 1090 INGSLARQAIKDLESRGAIRVVSVHSSQLIYTRAT 1124
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 16 EVPQYKLITPAVVS*KIK 69
EVP+YK ITP+V+S +++
Sbjct: 988 EVPKYKQITPSVLSERLR 1005
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 53 YLERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 184
YLE+ + + AR+ L + RE I+ +QH+ Q+++ +K D
Sbjct: 618 YLEQHRFKLEKARQRLTDHRECQNIEATIQHNQQLVHVEKSKLD 661
>03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635
Length = 603
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 132 CLMRPFSLSSMSALLAREPRTFNL 61
C +RP S +++ AL+AR PR L
Sbjct: 217 CYVRPVSFAALEALVARSPRLTRL 240
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 71 VRGSLARRALIELREKGLIKQVVQHHGQVIYT 166
+RG +RAL +R+ G I++VVQ+ Q Y+
Sbjct: 239 IRGIGGQRALKLIRQHGYIEEVVQNLSQTRYS 270
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 214 NLYHSLCDWIIALGRTRVDHLPMMLDYLF 128
NL+H++ DW A +RV LP + +F
Sbjct: 347 NLFHTITDWYSAYVSSRVTDLPNRPNVVF 375
>12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525
Length = 212
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 53 YLERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 184
YLE+ + + A++ L + RE+ I+ +Q + Q++Y +K D
Sbjct: 121 YLEQHQFKLERAKQRLADRRERMDIEATIQANRQLVYEEKSKLD 164
>05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422
Length = 259
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 53 YLERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 184
Y E+ + + A++ L+E RE+ I+ +Q + Q+++ +K D
Sbjct: 173 YFEQHQFKLEKAKQRLVERRERKEIEATIQANRQLVHEEKSKLD 216
>03_05_0350 +
23368111-23368219,23368519-23368526,23368650-23368658,
23368768-23368839,23368978-23369097,23369638-23370058,
23370131-23370285,23370461-23370625,23370822-23370825,
23371739-23371799,23371933-23372035,23372422-23372854,
23372978-23373120,23373608-23373740,23375567-23375576,
23375852-23375975,23376595-23377012,23377153-23377343,
23377569-23377811
Length = 973
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 84 WREEHSSSLGKKVSSNR*SNIMGR*STRVRPR 179
W ++ SSS G K+ + R SN + S + PR
Sbjct: 528 WMQKDSSSKGNKIGNTRSSNTPSKFSGCILPR 559
>02_02_0060 +
6446317-6446871,6447836-6448276,6449035-6449265,
6449382-6449473,6449555-6449615,6451541-6451618,
6451853-6452014
Length = 539
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 188 DHRPWSHACRSPAHDVGL 135
DH+P H+ RS H++G+
Sbjct: 431 DHKPMGHSARSLIHNIGV 448
>02_02_0058 -
6423776-6423850,6424302-6424379,6426096-6426156,
6426239-6426330,6426440-6426670,6427510-6427950,
6429037-6429591
Length = 510
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 188 DHRPWSHACRSPAHDVGL 135
DH+P H+ RS H++G+
Sbjct: 431 DHKPTGHSARSLIHNIGV 448
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,918,700
Number of Sequences: 37544
Number of extensions: 97636
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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