Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_A22
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    63   4e-11
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical...    26   5.8  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 30/45 (66%), Positives = 35/45 (77%)
 Frame = +2

Query: 59  ERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDPV 193
           ERLKVR SLA+  L EL+ KGL+K VV HHGQV+YTRATK  D +
Sbjct: 71  ERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEADVI 115



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +1

Query: 13  KEVPQYKLITPAVVS*KIK 69
           KEV  YKLITP+VVS ++K
Sbjct: 56  KEVITYKLITPSVVSERLK 74


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 65  LKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 169
           L V+GS+ + A +ELR   +  Q +  H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225


>AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical
           protein Y57A10A.28 protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 144 CWTTCLMRPFSLSSMSALLAREP 76
           CW +C++  F+ S +S  L  EP
Sbjct: 62  CWLSCMLMSFAGSFLSCFLLGEP 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,884,557
Number of Sequences: 27780
Number of extensions: 80536
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)