Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_A20
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   239   1e-63
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    31   0.90 
Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z70686-3|CAA94611.1|  364|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  239 bits (586), Expect = 1e-63
 Identities = 109/186 (58%), Positives = 142/186 (76%)
 Frame = +3

Query: 204 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 383
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 384 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 563
            +KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK 
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120

Query: 564 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVS 743
           +RRV +  GV    S  QKDE+++EGN ++ VS +AA IQQST VK KDIRKFLDG+YVS
Sbjct: 121 VRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVS 180

Query: 744 XKTTVV 761
            KTT+V
Sbjct: 181 EKTTIV 186


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 454 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 317
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = +3

Query: 321 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 485
           H+  D++++  +   ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 486 AHF 494
            +F
Sbjct: 421 LNF 423


>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -1

Query: 248 PVWDFDFLICYNLLHVWA*KQEQV*NITSQMFTKFFDTFSQFITKISVITHFRSLNII*K 69
           P   F+  ICY+++HV      Q  ++ S  +T F  TF ++     V+   +++ I+  
Sbjct: 78  PCRHFEAFICYSMMHVL-----QTSSLISG-WTVFLTTFMKYQAAKHVVLPKKNIWIVIC 131

Query: 68  IIVANFHY-VGCEIYL 24
           +I A     V CEIYL
Sbjct: 132 VIFAIISVSVACEIYL 147


>Z70686-3|CAA94611.1|  364|Caenorhabditis elegans Hypothetical
          protein R10H10.3 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 71 KIIVANFHYVGCEIYLDFFRNNT 3
          K+IV+N  ++GC +  DF+ N T
Sbjct: 30 KVIVSNDDFIGCPVNNDFYYNGT 52


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -1

Query: 761 HNSCFXRYIKTIQELSDILILDCSRLLDESSRARDIFQ 648
           +N+C  R IK +  L+ +L  + SRL +  SR RD+F+
Sbjct: 25  NNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFK 60


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 447  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 584
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,670,554
Number of Sequences: 27780
Number of extensions: 380526
Number of successful extensions: 918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)