Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_A16
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   225   9e-60
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    31   0.29 
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    27   3.6  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   6.2  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   8.2  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  225 bits (549), Expect = 9e-60
 Identities = 118/246 (47%), Positives = 152/246 (61%), Gaps = 3/246 (1%)
 Frame = +1

Query: 136 VVIASAVSTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLGQ 315
           V I SAV TPM                   +  A+ER  I   ++ EV++GNV SANLGQ
Sbjct: 6   VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLGQ 65

Query: 316 APARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPF 495
            PARQ  + AGLP+S +CTTVNKVCASGMK+ +L AQ + TG  +I++AGG ESMSN P+
Sbjct: 66  NPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAPY 125

Query: 496 YLKRGE--TSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSY 669
           Y  +      YG ++LVDG++ DGL+D Y+   MGN AE  A++  I R  QD +A++SY
Sbjct: 126 YAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHSIDRASQDAFAISSY 185

Query: 670 KRSAAAYEAKAFVDELVPVPVPQKRGAP-VIFAEDEXYKRVNFEKFTKLSTVFQKENGTV 846
           KR+  A   KAF  E+VPV VP  RG P  +  EDE  K +N +K   +  VF K NGTV
Sbjct: 186 KRAQNAQATKAFEQEIVPVEVPVGRGKPNKLVTEDEEPKNLNEDKLKSVRAVF-KSNGTV 244

Query: 847 TAGNAS 864
           TA NAS
Sbjct: 245 TAANAS 250


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 373 TVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSN 486
           T    CA+G  +I  A   ++ G  D+I+AGG ES  N
Sbjct: 165 TTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCIN 202


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 640 DQDEYAVNSYKRSAAAYEA-KAFVDELVPVPVPQKRGAPVIFAEDEXYKRVNFEK 801
           ++ +YA +S +  A  YE  K  +  L+ +PV Q     VIF   + Y RV  EK
Sbjct: 208 NESDYA-SSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRVYVEK 261


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 333 CNICRFAKKYHMYNCKQSMC 392
           CN+C +  KY   NC  S C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 569 MCTTNFTWEIVLKTQQKNYKLLDKIKMNMLSIVTREV 679
           +  + + W +  KT++  YKL+    M + S+V  E+
Sbjct: 409 IAASGYVWHVGSKTERSRYKLMLDCVMIITSVVPSEL 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,792
Number of Sequences: 5004
Number of extensions: 64348
Number of successful extensions: 202
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)