Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_A14
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    29   0.65 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    29   0.65 
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    27   2.6  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   4.6  
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    27   4.6  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    27   4.6  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   8.0  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   8.0  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +1

Query: 628  KEGDYELDPTLKKDAVEVFDADFEKVN---FDNGAAAAGLINKWVENKTNERI 777
            K+G   L+P +  + V  + +++EK++   FD+     GL++ +  N+ N  +
Sbjct: 1277 KDGSGVLEPKIAANTVNQYPSEWEKIDLKVFDDLETTEGLLSSYCSNEWNREV 1329


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 604  NVANKIYIKEGDYELDPTLKKDAVEVFDADFEKVN 708
            + ++  Y+K+G +EL  T+  D   V D DF+ V+
Sbjct: 1256 STSDNFYLKQGGFELLDTIITDFSNVMDPDFDDVS 1290


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 307 TKLWQISSIIINPLVYYDSSIIFTSTEENKIL 212
           +K W  +S++++PL +  S I+F      KI+
Sbjct: 215 SKCWAFTSLLVDPLHFMFSQIVFEDLSGKKIM 246


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/60 (25%), Positives = 23/60 (38%)
 Frame = +1

Query: 628 KEGDYELDPTLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLSEDSLD 807
           + G Y   P  K     ++    +  NF         I KWV+    + +K + SE S D
Sbjct: 21  RSGHYLYKPNGKTSCCSLYTIRLDSYNFKIAKEQKKAIKKWVKYVNGKPLKPMKSEISTD 80


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 331 IKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTD 492
           I++P+L+        +I K++A+  NEL       S PL AE+     ++G  D
Sbjct: 48  IRSPILTRQPSEFEKSIYKYNAELWNEL-------SDPLPAEFYFKKGSVGEKD 94


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 8   KSNXHPTSIFSSFFHQGIFTIXCQKRCYLA 97
           K   HPT I  SF     FT+ C K   LA
Sbjct: 112 KKGIHPTVIAESFQRAAGFTVDCMKENALA 141


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = -2

Query: 289 SSIIINPLVY---YDSSIIFTSTEENKILSPPVPSKX*YLLXTTNY*LINDWHNXEDPXN 119
           SSII+N + Y   +  +I     + NK +   +P    +   + N  L+N+++       
Sbjct: 164 SSIIMNAVEYNQFFPLTITTLIVKNNKNVVSNLPKNVSFYFHSDNTVLLNEYYKSLSKLK 223

Query: 118 G*FKKSLRKITPFLTXNCENALMKERR 38
             F+  + K TP+ + N   +L  + +
Sbjct: 224 NNFRGIIYKTTPYGSCNDTESLQVDTK 250


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 3    FENQIXTPLPSFLLSFIKAFSQXIVK 80
            F + + +PLP FLLS  K F++ +++
Sbjct: 1144 FASSLKSPLPPFLLSQAKRFNKFLLE 1169


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 349 SMDSKALSSAITKFSAKFCNELDKKKNVVS 438
           S DSK+L   +  F++K C E+DKK  +++
Sbjct: 10  SCDSKSLG--VDDFTSKRCREIDKKALLIT 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,723
Number of Sequences: 5004
Number of extensions: 60531
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)