Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_A14
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.4  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = -1

Query: 470 NASKYSADNGDDTTFFFLSSSLQNFAENLVIAEDKAFESILRTGFFISNSVNSINKTLAN 291
           N   +S +  D+ + +    ++ NF+    I + KAF ++ +      N+ NS  K+++N
Sbjct: 488 NVFAFSRETEDNGSLY----AILNFSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKSISN 543


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 805  RGCLHSRDL*CV 770
            R CLH RDL CV
Sbjct: 1096 RLCLHHRDLPCV 1107


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = -1

Query: 470 NASKYSADNGDDTTFFFLSSSLQNFAENLVIAEDKAFESILRTGFFISNSVNSINKTLAN 291
           N   +S +  D+ + +    ++ NF+    I + KAF ++ +      N+ NS  K+++N
Sbjct: 488 NVFAFSRETEDNGSLY----AILNFSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKSISN 543


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 687 IEYLDSVLLKCWVELIVTLLDVYFVGYIKR 598
           ++ +D  L  C+V +  +LL+   VGY+ +
Sbjct: 280 VKSIDVYLGTCFVMVFASLLEYATVGYMAK 309


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 687 IEYLDSVLLKCWVELIVTLLDVYFVGYIKR 598
           ++ +D  L  C+V +  +LL+   VGY+ +
Sbjct: 280 VKSIDVYLGTCFVMVFASLLEYATVGYMAK 309


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 768  ICFIFNPFVY*AGGCGSV 715
            ICF   P V  A GC +V
Sbjct: 1701 ICFTMRPVVSCASGCTAV 1718


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 687 IEYLDSVLLKCWVELIVTLLDVYFVGYIKR 598
           ++ +D  L  C+V +  +LL+   VGY+ +
Sbjct: 219 VKSIDVYLGTCFVMVFASLLEYATVGYMAK 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,237
Number of Sequences: 438
Number of extensions: 3820
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)