Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_A13
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...   203   3e-53
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    29   0.81 
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    26   5.7  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    26   7.6  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score =  203 bits (495), Expect = 3e-53
 Identities = 103/208 (49%), Positives = 150/208 (72%), Gaps = 2/208 (0%)
 Frame = +2

Query: 119 MSGQALXALFPSRGAQLLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 298
           M+ +    +FP+R     +K RL GA  GH LLK+K++AL+ RFR I+  I + K  MG 
Sbjct: 1   MASKQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGR 60

Query: 299 VMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGS-DT 472
           VM+ AAFS+AE  F  G+  N  + Q+V + ++++RSK++N++GV LP FE   D S D 
Sbjct: 61  VMQIAAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDD 120

Query: 473 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 652
           ++L GL +GGQQ+ K ++ ++ AV+ LV+LAS Q++FV L +V+++TNRRVN+IEH+IIP
Sbjct: 121 FQLTGLGKGGQQIQKARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIIIP 180

Query: 653 RLERTLAYIISELDELEREEFYRLKKIQ 736
           RLE T+ YI SEL+ELERE+F RLKK+Q
Sbjct: 181 RLENTIKYIESELEELEREDFTRLKKVQ 208


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 24/89 (26%), Positives = 41/89 (46%)
 Frame = +2

Query: 473  YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 652
            + L  L    Q   +LKK     ++L  EL   Q S   ++  +  TN  + A+E+++  
Sbjct: 811  FNLRPLLSSTQNDKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLL-- 868

Query: 653  RLERTLAYIISELDELEREEFYRLKKIQD 739
              ER +A    + +E+ R    RL  I+D
Sbjct: 869  TTERAIAL---DKEEILRRTQERLANIED 894


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 258 IIRNLT*RASAFFLRRPWPFTAPARRPLINSWAPREGK 145
           ++R+       FFL   +PF +P    L +SW P + K
Sbjct: 65  VVRHFPDLVMEFFLPEAYPFNSPPTFFLKSSWLPLKQK 102


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 560 LASLQTSFVTLDEVIKITNRRVNAIEHVII 649
           + SL       D+V+KI  +R   ++H++I
Sbjct: 81  MTSLNLFVTKFDQVLKILEKRAPTVDHILI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,346
Number of Sequences: 5004
Number of extensions: 59288
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)