Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_A12
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    28   1.2  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    28   1.6  

>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 453 ISDDGDLREDLXKSIAECYRSDSN-FSSQATSDITNDEE 566
           + DDGD+ ED+ K     Y  +S+  S +  SD +N+ E
Sbjct: 127 VFDDGDIEEDMNKIHDAWYAFNSHELSDEENSDSSNERE 165


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 411 EGXDSD--RCSEDFDGISDDGDLRE-DLXKSIAECYRSDSNFSSQATSDITN 557
           EG D D     E++ GISDDG   E +  K +AE   S+S   S A  D  N
Sbjct: 485 EGSDQDGEEAEEEWHGISDDGKADESESTKPVAEGSASESTDES-AVDDNKN 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,605
Number of Sequences: 5004
Number of extensions: 43364
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)