Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_A12
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0036 - 11455762-11455802,11455996-11456104,11456207-114568... 32 0.53
12_01_0489 + 3872495-3872538,3872663-3872741,3872835-3872914,387... 31 0.70
03_06_0195 + 32256771-32258792 31 1.2
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 30 2.2
09_03_0041 + 11826788-11828002,11828101-11828563,11828668-118287... 30 2.2
06_03_1315 + 29270679-29270908,29270992-29271394,29271633-292717... 29 3.8
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 29 3.8
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 5.0
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 28 6.6
04_03_0505 + 16628145-16628217,16628612-16628767,16628964-166291... 28 8.7
>08_02_0036 -
11455762-11455802,11455996-11456104,11456207-11456854,
11457422-11457491,11458563-11458624,11458729-11458803,
11459423-11459514,11460233-11461466
Length = 776
Score = 31.9 bits (69), Expect = 0.53
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Frame = +3
Query: 420 DSDRCSE-DFDGI--SDDGDLREDLXKSIAECYRSDSNFS-SQATSDIT-NDEEFQATAL 584
DSD SE D++G +DDGD E+ SD S S + D++ D +
Sbjct: 211 DSDEESESDYEGRDGNDDGDSDEEGSDVNEGGSESDEELSGSDSEEDLSIGDSSVDDEVV 270
Query: 585 VQFMDILNDLDEVLDKSLLACL------DDDTANYDXDENDLICKIK 707
+M+ + +E+L +A + DDD + D DE+ + K+K
Sbjct: 271 ADYMEGIGGSEELLSSKWVAGMNLVDSDDDDEMDTDEDEDGFLKKVK 317
>12_01_0489 +
3872495-3872538,3872663-3872741,3872835-3872914,
3873888-3874007,3874090-3874159,3874238-3874311,
3874393-3874513,3874600-3874662,3874748-3874807,
3875156-3875281,3875358-3875441,3875912-3876010
Length = 339
Score = 31.5 bits (68), Expect = 0.70
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +3
Query: 447 DGISDDGDLREDLXKSI-AECYRSDSNFSSQATSDITNDEEFQATALVQFMDILNDLDEV 623
D IS G + ED+ KS+ A C + + +++ ++I D + + QF+D++ + D++
Sbjct: 231 DLISVSGAIPEDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDI 290
Query: 624 LDK 632
D+
Sbjct: 291 PDE 293
>03_06_0195 + 32256771-32258792
Length = 673
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +3
Query: 405 VFEGXDSDRCSEDFDGISDDGDLREDLXKSIAECYRSDSNFSSQATSDITND--EEFQAT 578
+F+ + + E+ D DL D + I E +S++ + T+D+ +D E+ ++T
Sbjct: 171 IFDDEEEESDPEEED--IGSSDLETDSDEYI-ESTDEESDYEEEDTTDLESDSDEDTEST 227
Query: 579 ALVQFMDILNDLDEVLDKSLLACLDDD 659
D L+D DE LD C D++
Sbjct: 228 ESSHDEDDLDDDDESLDDDGSECFDEE 254
>11_08_0035 - 27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 411 EGXDSDRCSEDFDGISDDGDLREDLXKSIAECYRSDSNFSS-QATSDITNDEEFQ 572
E D+D ED++ SDD D+RE+ + + Y + + S + D D+E Q
Sbjct: 979 EEEDTDEDDEDYNQDSDDDDVREETEEEFLQRYAAAAGGESIEIVEDGDIDDETQ 1033
>09_03_0041 +
11826788-11828002,11828101-11828563,11828668-11828798,
11829227-11829577,11829723-11829879,11829968-11830260,
11830367-11830426,11830530-11830619,11830774-11830857
Length = 947
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +3
Query: 411 EGXDSDRCSEDFDGISD-DGDLREDL---XKSIAECYRSDSNFSSQATSDITNDEEFQAT 578
EG D D SED G+ D DGD EDL ++++E SD FS + N +
Sbjct: 203 EGLDGDGASEDEMGLVDGDGDEDEDLGSEEETLSE--SSDGEFSEDYAAPAANSSSMMDS 260
Query: 579 AL 584
L
Sbjct: 261 VL 262
>06_03_1315 +
29270679-29270908,29270992-29271394,29271633-29271796,
29271943-29272013,29272360-29272559
Length = 355
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 411 RKHYSKRRYRPHCXPGKFSVCS*RPSSVLTT 319
R+ Y R+ PH PG+F+ C ++V TT
Sbjct: 24 RRGYLPLRHPPHVAPGRFTACLLAVAAVTTT 54
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 573 ATALVQFMDILNDLDEVLDKSLLACLDDDTANYDXDEND 689
A A+V +L D DE +D LL D D N + + ND
Sbjct: 155 AEAVVATATVLGDKDEEVDSWLLLSKDSDNNNNNNNNND 193
>10_08_0762 - 20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 474 REDLXKSIAECYRSDSNFSSQATSDITNDEEFQATALVQFMDI-LNDLDEVLDKSLLACL 650
R D S+ + +S T+D+ ++ +++ D +N LD+ + + + AC
Sbjct: 794 RPDNANSLGQESSKHEPDASTGTNDLIDNAVMSRLRILKCRDDNINSLDDAIKQHVEACT 853
Query: 651 DDDTANYDXDENDLICKIKECIGDT 725
D + DE+ ++ KI+ GDT
Sbjct: 854 DQP----NWDEDGVVAKIQAPNGDT 874
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 483 GLPLDRRHLISRQSPHYTDRYRCLRKHYSKRRYRPHC 373
G+P D RH+ YT R + HY K ++P C
Sbjct: 194 GIPADYRHMDGSGVNTYTLVNRAGKSHYVKFHWKPTC 230
>04_03_0505 +
16628145-16628217,16628612-16628767,16628964-16629125,
16629699-16629842,16629952-16630028,16630710-16630874,
16630988-16631341
Length = 376
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 405 VFEGXDSDRCSEDFDGISDDGDLREDLXKSIAECYRSDSNFSSQATSDITNDEEFQAT 578
V G D D C+ + + I GD + C ++N S + + +TN + QAT
Sbjct: 303 VVVGGDQDGCANEANDIDSSGDHHQVAAVVTKPC---NANASQEIINKMTNSDGMQAT 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,141,209
Number of Sequences: 37544
Number of extensions: 260407
Number of successful extensions: 592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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