Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P24
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    29   0.46 
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    27   1.9  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    27   3.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   4.3  
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    26   5.7  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.7  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   7.6  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   10.0 

>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 167 LFIFKFKNHIKSSFFFCIFLCYVWNY-HDIVYCACMFYK 54
           +FI    ++   S F+ IF  +VW + H I++   +FY+
Sbjct: 393 IFIILLSSNSHYSQFWAIFQAFVWRFLHSIIHAFILFYQ 431


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 32  DMRSHLRVYRTYMRNIQYHGNSKHN 106
           D++ H +  RT  RNI  +G+ KH+
Sbjct: 28  DLKDHSKAKRTLCRNILLYGSCKHS 52


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +2

Query: 545 ILFILQFYYTFIITKC---LKHIFKSY 616
           +LFIL  YY F    C   +KHIFK +
Sbjct: 154 LLFILMRYYDFWTKACKDGIKHIFKKW 180


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 247  TTSQVIRQAATSEFITVCASYTGSVLNYLFLNSKTILK 134
            T  ++  +    EF+  C SY    + Y+FL S+   K
Sbjct: 1228 TEPKIAVKIGDDEFVVNCYSYKSGNITYVFLQSEVFYK 1265


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 521 LTFIEYNRILFILQFYYTFII--TKCLKHIFKSYYLHK 628
           L+F+EYN+ILF        II    CLK  +K++ L K
Sbjct: 611 LSFLEYNKILFTPDVRKRVIIFLNNCLK-FYKAFSLTK 647


>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 521 LTFIEYNRILFILQFYYTFIITKCLKHIFKSY 616
           L  +  N++L I    Y F  T   KH F+SY
Sbjct: 3   LVILSLNKLLTISYLLYRFPNTNQTKHCFQSY 34


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 423 CIVLFFGK*GICLLLNY*KLSNKAFFCLSTNFLVYNSIL 307
           C  + FGK G C+ L         F+C+STN LV + +L
Sbjct: 120 CFFIRFGKLGHCVYL---------FYCISTNVLVSSLLL 149


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 74  CACMFYKLVSVIAYHFKFEIHIF 6
           C  +FY +V  +  HFK EI +F
Sbjct: 483 CCDIFYLMVFSLRAHFKQEIEVF 505


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 12  MYFKLKMICDHTYEFIEHTCAIYNIMVIPNITQKDTK 122
           M+ KLK   + TY+   H C   N+++I  ++ K  K
Sbjct: 267 MFPKLKGHYEETYQKALHRCRTLNLILISFLSTKTDK 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,347
Number of Sequences: 5004
Number of extensions: 49041
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)